PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00622.1_g00027.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 303aa    MW: 31766 Da    PI: 9.3897
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00622.1_g00027.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-0997122227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              kt++C+ f     Ck+Gd+C+FaHg+
  Sme2.5_00622.1_g00027.1  97 KTKICNKFNTAEGCKFGDKCNFAHGE 122
                              89**********************96 PP
2zf-CCCH38.22.5e-12270295127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ykt+lC +fa+ G C +G+rC+FaHg+
  Sme2.5_00622.1_g00027.1 270 YKTKLCENFAK-GSCTFGERCHFAHGE 295
                              9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF146081.44859No hitNo description
PROSITE profilePS501037.1794962IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-1393125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-894125IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-495122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.00495123IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-697122IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.36E-15161237IPR004088K Homology domain, type 1
SMARTSM003229.8E-13165235IPR004087K Homology domain
PROSITE profilePS5008414.697166230IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.4E-17166235IPR004088K Homology domain, type 1
PfamPF000138.2E-12168232IPR004088K Homology domain, type 1
CDDcd001051.40E-14168230No hitNo description
Gene3DG3DSA:4.10.1000.105.7E-16267300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-9267299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.187269296IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-8269295IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9270295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDLRKRSRNE AGPNFNGGFK KSKPGDVLFL QFRMAEWVLS IHERNTAGCP FGESCHFLHY  60
VPGGYNAVAQ MMNLGPAPAS RNVAAPPMSN GNAPAVKTKI CNKFNTAEGC KFGDKCNFAH  120
GEWEIGKPIV PSQEDPRAMG VGPNPSRFGG RVEPAVSGPA ASFGTTATAK ISVDASLAGA  180
IIGKGGVNSK QICRQTGAKL AIRDHETDTN LRNIELEGTF EQISQASAMV RELINSLGPV  240
GGPGRAPSGP GGPGRGPAGP GGPAPPMSNY KTKLCENFAK GSCTFGERCH FAHGEAEMRK  300
TGA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2445800.0AC244580.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g6 map 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312058.11e-177zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-94C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3Q7IK941e-176A0A3Q7IK94_SOLLC; Uncharacterized protein
STRINGSolyc10g078750.1.11e-177(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-60C3H family protein