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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00622.1_g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bZIP | ||||||||
Protein Properties | Length: 296aa MW: 33654.9 Da PI: 6.001 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.1 | 2.2e-09 | 118 | 158 | 4 | 41 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k rr+++NReAAr+sR RKka+i++Le + ++Le+e Sme2.5_00622.1_g00019.1 118 AKTLRRLAQNREAARKSRIRKKAYIQQLESsriRLAQLEQE 158 5889************************9632255555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.3E-8 | 114 | 162 | No hit | No description |
SMART | SM00338 | 4.7E-7 | 115 | 194 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.772 | 117 | 161 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.9E-7 | 118 | 158 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 7.55E-23 | 119 | 171 | No hit | No description |
SuperFamily | SSF57959 | 4.18E-7 | 119 | 161 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 122 | 137 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 6.6E-30 | 210 | 282 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MLHQSSSVMP EHFINKESSS TGGYDLGELD DQALFLYLDA QDPSSQQDQI QNNSEMMRPP 60 TLNIFPSQPM HVEPSSTKEN AGFVSSGSEK SSEPSMMELS NSKNNVLSTS SGPEPKVAKT 120 LRRLAQNREA ARKSRIRKKA YIQQLESSRI RLAQLEQELQ RARAQGFHFA GSALLGGDQG 180 LPSNIGNMSS DAAVFDMEYS RWLEEHHRLM CELRNALTEH FPENDLRIYV ENCVTHYDEM 240 MNLKSMLIKS DVFHLISGMW KTPAERCFIW MGDFRPSELI KVRVYALSDH LQDNYS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975522 | 1e-116 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362280.1 | 0.0 | PREDICTED: transcription factor TGA2-like | ||||
Swissprot | Q52MZ2 | 1e-147 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | A0A2G2YP49 | 0.0 | A0A2G2YP49_CAPAN; Transcription factor HBP-1b(C1) | ||||
STRING | Solyc10g078670.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2279 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.1 | 1e-102 | bZIP family protein |