PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00622.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C3H

Protein Properties

Length: 702aa MW: 76540.7 Da PI: 7.3692

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00622.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.9e-07	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Sme2.5_00622.1_g00001.1 280 PCPEFRK-GACRRGDMCEYAHG 300 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	8.7E-19	11	152	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.24E-17	16	138	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.4E-10	54	128	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.555	59	135	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.25E-15	59	137	No hit	No description
SMART	SM00248	0.0096	59	89	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.9E-5	60	75	IPR002110	Ankyrin repeat
SMART	SM00248	3.1E-4	94	126	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.476	94	129	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.9E-5	113	127	IPR002110	Ankyrin repeat
SMART	SM00356	9.5E-6	275	301	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	280	302	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	280	300	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.3E-4	308	338	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	51	310	333	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MNMNHLTVET EDTLASLLEF AANNDIDAFK RWIEHDLSSI HEVGLWYGRQ KGSKQMVLEH 60 RTPLMVAATY GSIDVLKLIL SLPGVDVNHS CGRDKSTALH CAASGGSLNA VDAVKLLLEA 120 GADPNFKDAN GHRSLDVIVT SLKVHTMKSS LENLLKTDGM GDCNLRVSMA SSNSNSPPLS 180 PSLGNRSPSS ASDTTSSPKS AKSSDLPVPS PPEKKEYPID PSLPDIKNSI YSTDEFRMFS 240 FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACR RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGT KCDRRVCFFA HVQEELRPLY VSTGSAVLSP RSNTSANAID 360 FAAVMGLIPG SPSSVSVMSP SPFTPPMSPS ANGVSNMGWS PQNVPVLHLP GSNLQSSRLR 420 SSLNARDIPA KDLTMLSDFD VQQQQLLNGL SCLSQSSMSA NSFNRSVRPK TLTPSNLEDL 480 FSAEGSSPRY SDQALSQTVF SPTHKSAVFN QFQQQQKSML SPINTNFSPR NVDNPLLQGS 540 YGVPSSRSMS PRGMEPISPI NSRVSMLAQG DKQHQFRSLS SRDLGSSAAS AIVGSPSDTW 600 TNWGVGSGKP DWAVNNEEFG RLRRSSSFEL ANNGEEPDLS WVQSLVKESP QETKNKSASR 660 ASGLTGSGAD ISEGSASSSQ IEQFDQLGAW MEQMKLDQLI AQ

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MNMNHLTVET EDTLASLLEF AANNDIDAFK RWIEHDLSSI HEVGLWYGRQ KGSKQMVLEH  60
RTPLMVAATY GSIDVLKLIL SLPGVDVNHS CGRDKSTALH CAASGGSLNA VDAVKLLLEA  120
GADPNFKDAN GHRSLDVIVT SLKVHTMKSS LENLLKTDGM GDCNLRVSMA SSNSNSPPLS  180
PSLGNRSPSS ASDTTSSPKS AKSSDLPVPS PPEKKEYPID PSLPDIKNSI YSTDEFRMFS  240
FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT KCDRRVCFFA HVQEELRPLY VSTGSAVLSP RSNTSANAID  360
FAAVMGLIPG SPSSVSVMSP SPFTPPMSPS ANGVSNMGWS PQNVPVLHLP GSNLQSSRLR  420
SSLNARDIPA KDLTMLSDFD VQQQQLLNGL SCLSQSSMSA NSFNRSVRPK TLTPSNLEDL  480
FSAEGSSPRY SDQALSQTVF SPTHKSAVFN QFQQQQKSML SPINTNFSPR NVDNPLLQGS  540
YGVPSSRSMS PRGMEPISPI NSRVSMLAQG DKQHQFRSLS SRDLGSSAAS AIVGSPSDTW  600
TNWGVGSGKP DWAVNNEEFG RLRRSSSFEL ANNGEEPDLS WVQSLVKESP QETKNKSASR  660
ASGLTGSGAD ISEGSASSSQ IEQFDQLGAW MEQMKLDQLI AQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351223.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_015165890.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_015165891.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A0V0IT35	0.0	A0A0V0IT35_SOLCH; Putative zinc finger CCCH domain-containing protein 30-like
STRING	PGSC0003DMT400021056	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]