PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_00601.1_g00018.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YC

Protein Properties

Length: 178aa MW: 19408.4 Da PI: 6.5076

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00601.1_g00018.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	78.8	7.2e-25	1	76	26	101
NF-YC 26 ikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 +k+i+k++ dv ++saeaP+ll kacel+ eltl s lh ++n+r+ l+k d+ +av +t+ fdflv i prde+ Sme2.5_00601.1_g00018.1 1 MKRIMKSNLDVLKVSAEAPNLLVKACELLTGELTLHSRLHIQSNQRQLLHKKDMVDAVRQTEAFDFLVKILPRDEI 76 59***********************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.8E-7	1	58	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.8E-17	1	73	IPR009072	Histone-fold
SuperFamily	SSF47113	3.67E-15	2	82	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKRIMKSNLD VLKVSAEAPN LLVKACELLT GELTLHSRLH IQSNQRQLLH KKDMVDAVRQ 60 TEAFDFLVKI LPRDEINEGA TGFGPGMVGS TVSDVPNSYP PMGQPVVPGV ITGNPAMLVV 120 APSMCVHPWL QAWEAVENYP YATGGNNGQG NHDPPSGMME PPRLIGYRMI DMLHGNLA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-17	1	73	23	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351509.1	6e-53	PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X2
Refseq	XP_015166000.1	7e-53	PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X3
TrEMBL	M1B8B6	1e-51	M1B8B6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400039470	2e-52	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4087	21	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-37	nuclear factor Y, subunit C1