PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00572.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 776aa    MW: 85826.6 Da    PI: 4.8516
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00572.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.4e-2066119356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k++++t+eq++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Sme2.5_00572.1_g00001.1  66 KKRRLTPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 119
                              5678*************************************************9 PP
2HD-ZIP_I/II133.29.7e-4365156192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrl+ eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ ++++k++++
  Sme2.5_00572.1_g00001.1  65 EKKRRLTPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDQLKSSYDSLLADFDSIRKDNDK 150
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              L++e+ 
  Sme2.5_00572.1_g00001.1 151 LKSEVV 156
                              **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.36E-2051123IPR009057Homeodomain-like
PROSITE profilePS5007118.41561121IPR001356Homeobox domain
SMARTSM003892.1E-2064125IPR001356Homeobox domain
CDDcd000863.06E-1966122No hitNo description
PfamPF000462.3E-1766119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-2167128IPR009057Homeodomain-like
PRINTSPR000312.4E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000312.4E-5101117IPR000047Helix-turn-helix motif
PfamPF021832.6E-17121163IPR003106Leucine zipper, homeobox-associated
SMARTSM013498.0E-16397625No hitNo description
SuperFamilySSF483719.05E-16400597IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.101.2E-13404598IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.109.3E-18689735IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001629.43E-14690736No hitNo description
PfamPF136394.3E-13690733IPR001841Zinc finger, RING-type
SuperFamilySSF578501.45E-19690738No hitNo description
PROSITE profilePS5008912.15691733IPR001841Zinc finger, RING-type
SMARTSM001849.3E-8691732IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MGSGHIFFDP SSCHGNMLFL GNGDPIFRGP RSTMMKMEDS SKRRPFFSSP EDLYDEEYYD  60
EQSPEKKRRL TPEQVHLLEK SFETENKLEP ERKTQLAKKL GLQPRQVAVW FQNRRARWKT  120
KQLERDYDQL KSSYDSLLAD FDSIRKDNDK LKSEVVSLME KLQGKVVGAA GESEKTEALE  180
VDAMTTLQVK VKAEDRLSSG SGGSAVVDEH SPQLVDSGDS YFHTDHEEYP GPGGCNIPPP  240
VDGLQSEEDD GSDDGSCHGY FSNVFVAAEE QHHEGEEPLG WFWSKANRRI PGVIAVSLNL  300
ESSVTLYTTR ISESNPYMMS EEAASDLIAL PEAGKNKETP SNGSVPVIAV ESVDKSSKDK  360
ERGKPALLVG PGLNGDSEVN TGAEVGNSEV EYIESENLND VEDVDTSLKT LLTGLDSKDW  420
VLVCEALNDV RRLSLFHKEA MADMLATVIP LVVKSLKNPR SAVCKTAIMA SADIFKAYSD  480
SIVDLMDPLL VQLLLKSSQD KRFVCEAAEK ALIAMTTWVS PSLLLPKLQP NLKHRNPRIR  540
AKASSCFSRS VPRLGVEGIK AYGIENFIRI AASQLSDQLP ESREAARTLL LELQNIYEKA  600
LNVNPPPAVS EDPETISWEH FCQSNLSPLS AQAVLRVTNL TREVLREFNR RPNNINMAER  660
GSNSMSREDI EQLPCFVFQA KEKEISTPAE CAICLDNFKV GDKCRILPQC NHSFHAECID  720
LWLLNSLFCP ICRASTEILR GGSLSPGESS GYSESGGNVA ANVQFSGTVS GDGRTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM9022880.0AM902288.1 Solanum lycopersicum mRNA for homeodomain leucine zipper protein (hb-1 gene).
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-90homeobox 1