 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_00563.1_g00003.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
bHLH |
| Protein Properties |
Length: 335aa MW: 37632.9 Da PI: 6.8003 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00563.1_g00003.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 29.2 | 1.6e-09 | 58 | 141 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.................................TTS-STCHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkas..............................kapskKlsKaeiLekAveYIksL 54
r++ + rE+ RRdr+N+ f eL + l ++ +K++Ka+iL +++ +k+L
Sme2.5_00563.1_g00003.1 58 RKVQKADREKLRRDRLNEQFMELGKTLEYHRayqtpeyliqclhtaleqstkdpldqklyaDPDRPKNDKASILSDTIQVLKDL 141
5677889**********************555****************************8888888**************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MDQLNHGGLY QSNQLPNHCL TELSPLPSDV SMPPNGLHSE SSSKQKPEAE LKDSIAARKV 60
QKADREKLRR DRLNEQFMEL GKTLEYHRAY QTPEYLIQCL HTALEQSTKD PLDQKLYADP 120
DRPKNDKASI LSDTIQVLKD LTSQVGRLKS EYAALTDESR ELTQEKNDLR EEKASLKSDI 180
ESLNAQYQQR MRTMYPWAGM DHSMVIHPPS YPYPMPVPVP TGPVPMHRSQ PTQYMSPIIQ 240
PGSVPRQESR NRSSEQGESR IEKREDSNEV ATDLELKTPG SASEQDLSSG QKKSRKLPKK 300
DNSLTDGSSS SRCSSSHSVQ AVSSNSVVRG TKTDD
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 291 | 299 | KKSRKLPKK |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC240854 | 6e-91 | AC240854.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-25n22 map 1, complete sequence. |
| GenBank | AC240859 | 6e-91 | AC240859.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-138h16 map 1, complete sequence. |
| GenBank | HG975440 | 6e-91 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
| GenBank | HG975513 | 6e-91 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
