PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00549.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 370aa    MW: 40272.1 Da    PI: 6.3176
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00549.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-154588347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +W+++Ed +l ++v+++G ++W+ Ia+ +  gR++k+c++rw + 
  Sme2.5_00549.1_g00010.1 45 PWSPDEDAILTELVNKFGARNWSMIAQGIT-GRSGKSCRLRWCNQ 88
                             8****************************9.***********985 PP
2Myb_DNA-binding55.51.3e-1795139147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              r+++T +Ed ++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
  Sme2.5_00549.1_g00010.1  95 RKPFTDDEDHIIINAHAVHGNK-WASIAKLLP-GRTDNAIKNHWNST 139
                              789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.2323889IPR017930Myb domain
SMARTSM007176.9E-134291IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-2944136IPR009057Homeodomain-like
PfamPF002491.4E-144588IPR001005SANT/Myb domain
CDDcd001671.76E-134587No hitNo description
Gene3DG3DSA:1.10.10.605.9E-254596IPR009057Homeodomain-like
PROSITE profilePS5129425.61390144IPR017930Myb domain
SMARTSM007173.9E-1594142IPR001005SANT/Myb domain
PfamPF002491.3E-1595139IPR001005SANT/Myb domain
CDDcd001671.47E-1197140No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2397143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MTETAEQSGY PAADDGDGDG GYVVVDGGEA ILLRCTCPNY HSLTPWSPDE DAILTELVNK  60
FGARNWSMIA QGITGRSGKS CRLRWCNQLD PVLKRKPFTD DEDHIIINAH AVHGNKWASI  120
AKLLPGRTDN AIKNHWNSTL RRRFAGVWRV KPMGSMMLDD NGIDKAKALS EETMSRGYLD  180
QIKPLEIMEV SGTERMSSQS DNRAQICEMH GITEKTPHFV SERSRSTSIG NSDPSATHPT  240
EKIGAFNVYN PSATSRIVPM QGPLIHSFSP DFDICKLLEG VSGETIVPQG CGHGCCSATT  300
NSTSKSSLLG PEFVEYEEHP PLLSHELASI GTDLNSIAWI KSGLENAGKL SSLTTSQRNS  360
RHSAAQVGFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-37451439107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355677.10.0PREDICTED: myb-related protein B
TrEMBLM1CLE10.0M1CLE1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000699210.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.14e-92myb domain protein 109