PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00529.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YC
Protein Properties Length: 661aa    MW: 74682 Da    PI: 6.9674
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00529.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.23.2e-173914711898
                    NF-YC  18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                                ++ +arikki++adedv +i+  +Pvl+ska elf+ +l  r++  +     +t++   ++ +v++ ++fdfl ++v +
  Sme2.5_00529.1_g00001.1 391 YSKYGIARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 471
                              56788***********************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142231.4E-8153No hitNo description
PfamPF077272.1E-7162214IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF561122.04E-5278310IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.20.101.1E-22396457IPR009072Histone-fold
PfamPF008084.8E-17396456IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.31E-18403473IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
CLAKEQKYFV MKETSATQLW KKLKDKYMTK SIENRLYLKK KLFRFQYKKE SKLDARSKKA  60
IFVGFNEGVK AFRLWEPESK KIVLSRDVVF DESVMLKQIT LEKGNQNLNS HQQVELESPI  120
IYVETSNYPE EQSVEDDEIS DDTKKEDPSS TDNIRYKARL VAKDLGEAKK ILGMEITRDR  180
AKGTIWLTQT QYLKKVLQTF GIGDNTKPVS TPLASQFKLS LLLSPSTDDQ KKQMEGVPYT  240
NAVGALMFAM VCPRPDISHA VSMIQACKAS VSGEVPEFCA RAQALIHGDL HAGYFMVTHN  300
SIQVIDPEFS IAKTKRPILP WKIALLVSLP SHYWKSSRWD ETLRPHLEEV IIGMRLLLDN  360
ESITSAMCNG IYNDGSVRIV QADNKEERVL YSKYGIARIK KIMQADEDVG KIAMAVPVLV  420
SKALELFLQD LCDRTYDITL RRGAKTVNSL HLKHCVQSYN VFDFLREVVS KVPDYGHSHA  480
ACEMPKRRKA ATEEHQDSED EYKRCRTEMS PVSGSGRGRG RGRGRGRGRV SRADKDLSRP  540
DMQLESCMSL QQSGQQDPNP GTQTENCTEP KGSPKQDSTV CDKENSVVTA SNLKVNVDDS  600
IDKPAALETA VCNPSPKPVT EKVEEGPQWS LEMDRMVIDP AHMSQLNTSV AEEEEDYDEE  660
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A5e-173924571075Transcription Regulator NC2 alpha chain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1518527RGRGRGRGRG
2518528RGRGRGRGRGR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141430.0BT014143.1 Lycopersicon esculentum clone 133262F, mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79602230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.15e-53nuclear factor Y, subunit C11