PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00528.1_g00022.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HRT-like
Protein Properties Length: 590aa    MW: 66198.2 Da    PI: 9.2349
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00528.1_g00022.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like54.81.5e-17270300131
                 HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                              iCGv+l++GsvC r+P+kg+KRC+eHKGm+i
  Sme2.5_00528.1_g00022.1 270 ICGVALGHGSVCIRPPIKGNKRCAEHKGMKI 300
                              8****************************97 PP
2HRT-like40.25.8e-13316345130
                 HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                              iCG+il+ G +C+r+P + +KRC eH G+R
  Sme2.5_00528.1_g00022.1 316 ICGFILDSGVPCTRKPFQRNKRCIEHTGRR 345
                              8***************************99 PP
3HRT-like56.16e-18388418131
                 HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                              iCGv l+dGs C+rqP+ gR RCe HKGmR+
  Sme2.5_00528.1_g00022.1 388 ICGVYLNDGSLCTRQPASGRNRCERHKGMRV 418
                              8*****************************7 PP
4HRT-like37.24.9e-12449474126
                 HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeH 26 
                              +CG++l +Gs+C+r+P +g+KRC++H
  Sme2.5_00528.1_g00022.1 449 TCGATLCNGSFCSRKPSEGNKRCWQH 474
                              7************************* PP
5HRT-like34.82.7e-11486511126
                 HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeH 26 
                              +CG++l +Gs+C+r+P +g+ RC++H
  Sme2.5_00528.1_g00022.1 486 TCGATLYNGSFCSRKPSEGNIRCWQH 511
                              7************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd007190.0010396170No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MQLQLQSRMP AGDGSFTGRL KREDCKRTKH DSAFCDWKIL IGPNDWEYYL LRKEGAERYR  60
TQNLPNCTSC AGVYELGIAV PRRKAGREAS RLDPDYIIPV YVGKSDNVRT RLQQYGREGA  120
HLDNEIVLGS KRAGLFTEAF SRGFSIVYRW APMNDNKDAE RTEARLLDKF DYAWNKGSNG  180
VRRQNDVFRK GEGISRETRL PAFIRKVQLS LEKQKGIRIK ACEPLCLENG SDFHDSFKST  240
AFLPQIFKFG RSQPRIVSVR FGVNGDPDTI CGVALGHGSV CIRPPIKGNK RCAEHKGMKI  300
NSVHESTSPA EENAPICGFI LDSGVPCTRK PFQRNKRCIE HTGRRNRGFI SEPMTNNPVL  360
GYRTSSRNDL SSRVDTQHSQ IHQSHNIICG VYLNDGSLCT RQPASGRNRC ERHKGMRVQG  420
PISIPSVFAG PATKMHGNID LPSVSYSPTC GATLCNGSFC SRKPSEGNKR CWQHNIDLPS  480
VSYSPTCGAT LYNGSFCSRK PSEGNIRCWQ HNLDLPSVSY SPTYLPSASY SPTCGATLLN  540
GSFCSRKPSE AVNETVMRMP DLETRMHVPN EIDDYVSHFV WMVVMYCFIM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-164HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345326.10.0PREDICTED: uncharacterized protein LOC102589426 isoform X1
TrEMBLM1D7670.0M1D767_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000838170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77412330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.12e-91effector of transcription2