![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00515.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 500aa MW: 57594.8 Da PI: 5.3232 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 284.8 | 2.5e-87 | 114 | 486 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 lve Ll+ Ae v ++ + +a +lL++ ++l+s++g+p++Rl+ yf +AL++r+ r+ ++ + + ++s ++++a ++ + Sme2.5_00515.1_g00016.1 114 LVEHLLASAEKVGERLFDRAINLLNECEKLSSKTGNPVERLVYYFSQALRERVDRERGNTKGSGIDGMRDLQESLRSINACTIALQ 199 57899**************************************************5555544443334444679999999999889 PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakf 168 Pi ++ ++ qaIle ve+++++HiiD++i++G+QW L+qaLa+ + ++ l +T+++ + sk+++eetg+rL f Sme2.5_00515.1_g00016.1 200 DLPICQVVKFAGIQAILENVENSKKIHIIDLEIKMGVQWTILMQALATHQqnsrNPIEYLNVTALSGVQ--SKTNVEETGKRLMCF 283 99*********************************************888665444559********66..*************** PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 Ae+++ f+f++++++++ dle e+++++++Ea++V +++ l ++ +++++ d ++ ++k+l+P++++v+e ea++ns+ F+ Sme2.5_00515.1_g00016.1 284 AESFHFLFSFKIVTVEDILDLEREDFDIDKEEAIVVYSQYLLSNMI----TQQDRLDFLMGFIKGLNPRIMIVAEVEAKLNSPVFV 365 ****************************************999998....555566779*************************** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 +rf+eal y+ a+fd le + +++++r+ +E e++ i+n++a eg+er+ rh t e Wre ++++G++++++s++ qak++ Sme2.5_00515.1_g00016.1 366 NRFIEALFYHGAFFDLLEDCMKNNESTRMAMESEVMWHGIRNIIAVEGEERTIRHVTIELWREYFKRFGMEEMKMSNSSLYQAKMV 451 ************************************************************************************** PP GRAS 341 lrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +k++ ++ +++e +++ +v+gWk+ pL s+SaW+ Sme2.5_00515.1_g00016.1 452 AEKFSgKKSFTLEMNENFIVIGWKGTPLNSLSAWK 486 *****9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.266 | 88 | 465 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.7E-85 | 114 | 486 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 500 aa Download sequence Send to blast |
MKEQNEQHFV TFDDWDFDNE DKTTTVLYVK ETTESRNSLN SSLNILKDFG NGFRKLKGQK 60 IDVVQTSESE CTPSVCKLST EEILRLGGHK FIQSAEFDHP LFSLPDEDSR SVVLVEHLLA 120 SAEKVGERLF DRAINLLNEC EKLSSKTGNP VERLVYYFSQ ALRERVDRER GNTKGSGIDG 180 MRDLQESLRS INACTIALQD LPICQVVKFA GIQAILENVE NSKKIHIIDL EIKMGVQWTI 240 LMQALATHQQ NSRNPIEYLN VTALSGVQSK TNVEETGKRL MCFAESFHFL FSFKIVTVED 300 ILDLEREDFD IDKEEAIVVY SQYLLSNMIT QQDRLDFLMG FIKGLNPRIM IVAEVEAKLN 360 SPVFVNRFIE ALFYHGAFFD LLEDCMKNNE STRMAMESEV MWHGIRNIIA VEGEERTIRH 420 VTIELWREYF KRFGMEEMKM SNSSLYQAKM VAEKFSGKKS FTLEMNENFI VIGWKGTPLN 480 SLSAWKFHKS STFRRAYLTL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-40 | 137 | 486 | 26 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349956.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | M1A0F9 | 0.0 | M1A0F9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400011954 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3427 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03450.1 | 8e-51 | RGA-like 2 |