PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_00514.1_g00007.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YA

Protein Properties

Length: 311aa MW: 34207.4 Da PI: 9.763

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00514.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	87.2	2.3e-27	143	197	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++Il+RR++Rak e kk + rkpylh SRh hAlrRpRg+gGrF Sme2.5_00514.1_g00007.1 143 GPIFVNAKQYHGILRRRKSRAKEME-KKA-LTPRKPYLHLSRHLHALRRPRGCGGRF 197 69*****************9766.555.699*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.5E-29	140	200	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	31.134	141	200	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.2E-23	144	197	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.5E-20	144	166	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.5E-20	174	197	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MHTTVFSKGN EGVGQSQSVG TLCTTPWWSS GFVSQPVAYV EPFGQLKTTF VEQHPKGNAT 60 EFTITSGDCK SSSNGQKLPD IQSANSVHLA NMDYRGHFEL GFGQSLVSSK YPYGGQCVGL 120 FSAYSPQLSG RIMLPLNLAS DEGPIFVNAK QYHGILRRRK SRAKEMEKKA LTPRKPYLHL 180 SRHLHALRRP RGCGGRFLNT RNMNGTSKDG KTTDTSKTGN IHNFYPIGSQ NSEVLQSDSS 240 NLSSPKETSR NRFFDSSGVT DMYSSGNLDP FSFQNLRPQV QAIPDMMNTG HDIFMSGKWV 300 GAADSCCNLK V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	6e-17	142	198	2	60	HAPB protein
4g92_A	6e-17	142	198	2	60	HAPB protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-143	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006348448.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10 isoform X2
TrEMBL	M1BXA5	0.0	M1BXA5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400055061	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3706	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	1e-29	nuclear factor Y, subunit A10