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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_00423.1_g00013.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
WRKY |
Protein Properties |
Length: 277aa MW: 30155.2 Da PI: 5.6022 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00423.1_g00013.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 95.3 | 4.3e-30 | 74 | 132 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY ++Hnh+
Sme2.5_00423.1_g00013.1 74 QDSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPTMLLITYCSDHNHQ 132
79*************************998****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MEDRLYKSPF FHKQEDSTGT PPDNAADSCF SGDEAAEISM PSPRKRRGAK KKVISVPIIE 60 ADGSRSKGEV YPPQDSWSWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ VERSRLDPTM 120 LLITYCSDHN HQIPAAAATK HHHHNHPTIA TTPSNSSPTT STGTAEDNNA AAAAVTDAAV 180 QDKSSPEEPD PFAYQNDNGF SELAGELGWF SYMGTTTFME STSTSAVGST WNDSDVALML 240 PIREEDQSLF GDLGELPECS VVFRRYGVET PCCGGTG
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT013284 | 0.0 | BT013284.1 Lycopersicon esculentum clone 134891F, mRNA sequence. |