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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sme2.5_00377.1_g00002.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
ERF |
| Protein Properties |
Length: 344aa MW: 37979.6 Da PI: 4.4356 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00377.1_g00002.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 56.6 | 6.2e-18 | 74 | 123 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+G+r+++ +g+W+AeIrdp++ r++lg+f +aeeAa+a++ +++++g
Sme2.5_00377.1_g00002.1 74 QYRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNSAEEAARAYDVEARRIRG 123
69*******.**********954...3************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MCGGAIISDL VPPSRISRRL TADFLWDEFE ADFQHFKDYS DDDEDVKAFG SKSVRSADSS 60
SDAERSSKRK RKNQYRGIRQ RPWGKWAAEI RDPRKGIRVW LGTFNSAEEA ARAYDVEARR 120
IRGKKAKVNF PDDAPVAASR RVVKPNPQEA LQEENLNTVQ PNVAYINNLD AGSDESFSFF 180
EEKPAANQCG YKNTCFTAGD MGLGSVSPSA GANVYFSSDE GSNTFDCSDF DWGELGARTP 240
DMSSVLSEVL ESNGSHFDED ARPEKKQKSS SSTSLTGDGN TVNTLSEELS AFESQMKFLQ 300
IPYLEGNWDS SVDAFLNTSA IQEGGNAMDL WSFDDVPSLM GGVY
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC164347 | 0.0 | KC164347.1 Solanum tuberosum clone RSI9 ethylene responsive factor 1 mRNA, complete cds. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kosmacz M, et al.
The stability and nuclear localization of the transcription factor RAP2.12 are dynamically regulated by oxygen concentration.
Plant Cell Environ., 2015. 38(6): p. 1094-103
[PMID:25438831] - Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
Plant Sci., 2015. 236: p. 37-43
[PMID:26025519] - Gasch P, et al.
Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
Plant Cell, 2016. 28(1): p. 160-80
[PMID:26668304] - Gonzali S, et al.
Universal stress protein HRU1 mediates ROS homeostasis under anoxia.
Nat Plants, 2015. 1: p. 15151
[PMID:27251529] - Paul MV, et al.
Oxygen Sensing via the Ethylene Response Transcription Factor RAP2.12 Affects Plant Metabolism and Performance under Both Normoxia and Hypoxia.
Plant Physiol., 2016. 172(1): p. 141-53
[PMID:27372243] - Shahzad Z, et al.
A Potassium-Dependent Oxygen Sensing Pathway Regulates Plant Root Hydraulics.
Cell, 2016. 167(1): p. 87-98.e14
[PMID:27641502] - Yao Y, et al.
ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis.
New Phytol., 2017. 213(4): p. 1667-1681
[PMID:28164334] - Giuntoli B,Licausi F,van Veen H,Perata P
Functional Balancing of the Hypoxia Regulators RAP2.12 and HRA1 Takes Place in vivo in Arabidopsis thaliana Plants.
Front Plant Sci, 2017. 8: p. 591
[PMID:28487707] - Yao Y,Chen X,Wu AM
ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
Plant Signal Behav, 2017. 12(6): p. e1329073
[PMID:28537474] - Eysholdt-Derzsó E,Sauter M
Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
Plant Physiol., 2017. 175(1): p. 412-423
[PMID:28698356] - Giuntoli B, et al.
Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana.
Plant Cell Environ., 2017. 40(10): p. 2333-2346
[PMID:28741696]
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