PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00372.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 782aa    MW: 86430.1 Da    PI: 6.5486
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00372.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.4e-191573357
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Sme2.5_00372.1_g00009.1 15 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73
                             5679*****************************************************97 PP
2START1731.9e-541573652205
                              HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECT CS
                    START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetleviss 87 
                              +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +e+l+v+ +
  Sme2.5_00372.1_g00009.1 157 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVSEILKDRPSWFRDCRVVEVLNVLPT 241
                              789*******************************************************.9999999999****************9 PP

                              T..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
                    START  88 g..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167
                              +  g+++l +++l+a+++l+p Rdf+ +Ry+  + +g++v++++S+ ++q+ p+    +++vRae lpSg+li+p+++g+s +++v
  Sme2.5_00372.1_g00009.1 242 AngGTIELLYMQLYAPTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVQNFVRAEILPSGYLIRPCEGGGSIIHIV 327
                              999************************************************99988899*************************** PP

                              E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                    START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                              +h++l++++++++lr+l++s+++ ++kt+va+l+++++
  Sme2.5_00372.1_g00009.1 328 DHMNLEAWSVPEVLRPLYESSAVLAQKTTVAALRYLRQ 365
                              *********************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4511074IPR001356Homeobox domain
SMARTSM003895.2E-161278IPR001356Homeobox domain
SuperFamilySSF466898.13E-171477IPR009057Homeodomain-like
CDDcd000867.10E-171575No hitNo description
PfamPF000462.0E-161673IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-181773IPR009057Homeodomain-like
CDDcd146861.25E-667106No hitNo description
PROSITE profilePS5084826147375IPR002913START domain
CDDcd088756.72E-76151367No hitNo description
Gene3DG3DSA:3.30.530.201.4E-22156361IPR023393START-like domain
SuperFamilySSF559612.06E-37156368No hitNo description
SMARTSM002341.7E-42156366IPR002913START domain
PfamPF018522.7E-52157365IPR002913START domain
PfamPF086707.0E-45627781IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MASCKDGKSI MDNGKYVRYT PEQVEALERL YHDCPKPSSM RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKEASRL QSVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRRQST  120
PLATKDTSCD SVVTSGQHQL TSQHPPRDAS PAGLLSIAEE TLTEFLSKAT GTAVEWVQMP  180
GMKPGPDSIG IIAISHGCTG VAARACGLVG LEPTRVSEIL KDRPSWFRDC RVVEVLNVLP  240
TANGGTIELL YMQLYAPTTL APARDFWLLR YTTVMDDGSL VVCERSLGNT QNGPSMPPVQ  300
NFVRAEILPS GYLIRPCEGG GSIIHIVDHM NLEAWSVPEV LRPLYESSAV LAQKTTVAAL  360
RYLRQIAQEV SQTNVTNWGR RPAALRALSQ RLSRGFNEAV NGIADEGWSM LDNDGMDDVT  420
ILVNSSPEKL MSLNLSFANG FQPMSNAVMC AKASMLLQML EVIKLEGHSP EDAIMPRDMF  480
LLQLCSGMDE NAVGTCAELV FAPIDASFAD DAPLLPSGFR IISLESGKEA SSPNRTLDLT  540
SALETGSAEN KVANDLHSSG GTSRSVMTIA FQFAFESHMQ ESVASMARQY VRSIISSVQR  600
VALALSPSHL GPHGGLRLPL GTPEAHTLAR WICQSYSLSC GYYFFLIRCF LGVELLKSNT  660
DHGSESILKS LWHHSDAIIC CSAKALPVFT FANQAGLDML ETTLVALQDI TLEKIFDDHG  720
KKNLCTEFPQ IMQQGFACLQ GGICLSSMSR PISYERAVAW KVMNEENTAH CICFMFINWS  780
FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869250.0JQ686925.1 Nicotiana tabacum cultivar SR1 homeobox-leucine zipper protein ATHB-15-like protein (HB15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267275.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X2
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLM1CIB40.0M1CIB4_SOLTU; Uncharacterized protein
STRINGcassava4.1_001672m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]