 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_00372.1_g00006.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
GATA |
| Protein Properties |
Length: 354aa MW: 38363.9 Da PI: 6.1237 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00372.1_g00006.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 52.3 | 7.9e-17 | 244 | 278 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +C + kTp+WR gp g+ktLCnaCG++y++ +l
Sme2.5_00372.1_g00006.1 244 CLHCASDKTPQWRTGPFGPKTLCNACGVRYKSGRL 278
99*****************************9885 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MEASDFFISG FFSHAGDGDE QNPNNNNNNN NNGNNFSVDD LLDIPKEDEA MEDAFFNSIT 60
GNSADSSTVT VVDSCNSSVS GGDGHFNGNM SSRSFSNDPF TNNELCVQFE DLAELEWLSN 120
FVEESSSFSS EEVPNLQFIP LANIASGINT TDSSSSATTI STGANSPPAF PADTSVPGKA 180
RSKRSRAAPC DWSSRLQLLL SPATSSSESN NVSANSTTLT TPTAKSTKAP SKKRESVETP 240
GRKCLHCASD KTPQWRTGPF GPKTLCNACG VRYKSGRLVP EYRPASSPTF ISAKHSNSHR 300
KVLELRRQKD LQRHQALQQH QLLNQPAIFG VSNGGDEFLL HHHQNCGPNF RHII
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
