PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

ERF

Protein Properties

Length: 246aa MW: 26879.8 Da PI: 5.7061

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00372.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.1	4.5e-18	68	116	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+ +++g Sme2.5_00372.1_g00002.1 68 YRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAAISIKG 116 9**998.******843...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.44E-32	66	126	No hit	No description
SuperFamily	SSF54171	1.9E-21	67	125	IPR016177	DNA-binding domain
SMART	SM00380	9.6E-38	67	130	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.354	67	124	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-31	67	125	IPR001471	AP2/ERF domain
Pfam	PF00847	1.9E-12	68	116	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-10	68	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-10	90	106	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MAEVEVQISE AESSNTTSSV SSSSSSSLSA DSMHKSVFKS SSELPEEKQR PTKKQRVNGN 60 SDSRRQIYRG VRMRSWGKWV SEIREPRKKS RIWLGTYPTA EMAARAHDVA AISIKGSSAI 120 LNFPHLIDSL PRPVSNSPRD VQAAAAKAAS MRDPSSSSSS SSSSSSSTTT ITTGSEELCE 180 IIELPNLEES EDPKTELRLS ESIEGLLYSP WWADHSTDFC GYFLEHSAAA GESLICCSFE 240 TLKWAC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-19	68	125	15	73	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006343055.1	1e-124	PREDICTED: ethylene-responsive transcription factor TINY
Swissprot	Q9LYD3	3e-54	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	M0ZRX5	1e-122	M0ZRX5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400006751	1e-123	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	7e-53	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]