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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00372.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 26879.8 Da PI: 5.7061 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.5e-18 | 68 | 116 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+ +++g Sme2.5_00372.1_g00002.1 68 YRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAAISIKG 116 9****998.**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.44E-32 | 66 | 126 | No hit | No description |
SuperFamily | SSF54171 | 1.9E-21 | 67 | 125 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.6E-38 | 67 | 130 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 67 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 67 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-12 | 68 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 68 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 90 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MAEVEVQISE AESSNTTSSV SSSSSSSLSA DSMHKSVFKS SSELPEEKQR PTKKQRVNGN 60 SDSRRQIYRG VRMRSWGKWV SEIREPRKKS RIWLGTYPTA EMAARAHDVA AISIKGSSAI 120 LNFPHLIDSL PRPVSNSPRD VQAAAAKAAS MRDPSSSSSS SSSSSSSTTT ITTGSEELCE 180 IIELPNLEES EDPKTELRLS ESIEGLLYSP WWADHSTDFC GYFLEHSAAA GESLICCSFE 240 TLKWAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 68 | 125 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343055.1 | 1e-124 | PREDICTED: ethylene-responsive transcription factor TINY | ||||
Swissprot | Q9LYD3 | 3e-54 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | M0ZRX5 | 1e-122 | M0ZRX5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400006751 | 1e-123 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 7e-53 | ERF family protein |
Publications ? help Back to Top | |||
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