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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_00343.1_g00013.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
C2H2 |
Protein Properties |
Length: 300aa MW: 33817.4 Da PI: 7.3134 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00343.1_g00013.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 13 | 0.00031 | 122 | 144 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C++sF++ L H +H
Sme2.5_00343.1_g00013.1 122 YQCKTCNRSFPSFQALGGHRASH 144
9***********99999998887 PP
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2 | zf-C2H2 | 13.3 | 0.00024 | 203 | 225 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cg F++ L H+r+H
Sme2.5_00343.1_g00013.1 203 HECSICGAEFTSGQALGGHMRRH 225
78********************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MEVHQVRQED QDQNQDQEQD RQLNMVIKRR RTKRPRPPSP LALGITTSSC STVEGGELVD 60 GHVANSSLRS NNCDGVDDKI VRNNNMNQEE EDMANCLILL AQGHNYNQKS SSSHQSPMLD 120 VYQCKTCNRS FPSFQALGGH RASHKKPKTL EDQVKISKPF DHQQVENNTR LKLSNNDDHV 180 TTLSLQIPSN TITTTNKNKN RVHECSICGA EFTSGQALGG HMRRHRPLPN SISIASNHHS 240 HDQESHHHDQ ATKNTRAFLS LDLNLPAPED DHRPENPKFT FATKEQVIVF SASPLVDCHY
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |