 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_00333.1_g00014.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
TCP |
| Protein Properties |
Length: 237aa MW: 26599.5 Da PI: 10.2419 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00333.1_g00014.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 97.8 | 2e-30 | 35 | 148 | 2 | 120 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86
g kdrhsk+ T +g+RdRRvRls+++a +++dLqd+LG+d++sk +eWLl++ak++i++l++++ ++ +e+ + ++ + +
Sme2.5_00333.1_g00014.1 35 FGTKDRHSKVVTLKGLRDRRVRLSVPTALQLYDLQDKLGLDQPSKVVEWLLKEAKHEIDKLPQLQIPPIREAgLPLTELLKLN--- 117
589*************************************************************7777655543333333333... PP
TCP 87 sgkaaksaakskksqksaasalnlakesrakara 120
+++++a s+ +k+++++ +++e k +a
Sme2.5_00333.1_g00014.1 118 ---HRPTNALSSTLRKDEETMVVVSDEYGVKLNA 148
...2333333334444444444444444444444 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MITRGVDPSD NITKFPKKAN SRLKDPRIVC VPRAFGTKDR HSKVVTLKGL RDRRVRLSVP 60
TALQLYDLQD KLGLDQPSKV VEWLLKEAKH EIDKLPQLQI PPIREAGLPL TELLKLNHRP 120
TNALSSTLRK DEETMVVVSD EYGVKLNARN LDLINHLKGT SNSNSNRNSF TFAPSYQNDF 180
LSRPVSLGHS GSRHGVEEIQ NFNVVAALPS TMYNMPLSSQ VVVYSPAGLP QYVFHPQ
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC246813 | 1e-75 | AC246813.7 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-33h20 map 2, complete sequence. |
| GenBank | HG975514 | 1e-75 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
