PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00319.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 1182aa    MW: 131733 Da    PI: 8.3265
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00319.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-055173123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F r  nL+ H r H
  Sme2.5_00319.1_g00004.1 51 FVCEICNKGFQRDQNLQLHRRGH 73
                             89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-55073IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9495173IPR007087Zinc finger, C2H2
SMARTSM003550.0175173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SMARTSM0035525092122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:1.10.630.101.6E-14477628IPR001128Cytochrome P450
SuperFamilySSF482641.83E-12487625IPR001128Cytochrome P450
PfamPF000673.9E-7535642IPR001128Cytochrome P450
PROSITE profilePS513755.119622657IPR002885Pentatricopeptide repeat
PfamPF138120.0089646690IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.939658692IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.522693727IPR002885Pentatricopeptide repeat
PfamPF130412.2E-7728777IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.306728762IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.073764798IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.4E-4766799IPR002885Pentatricopeptide repeat
PfamPF130412.5E-17798847IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.838799833IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.3E-8801835IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.797834868IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.6E-6837870IPR002885Pentatricopeptide repeat
PfamPF128544.9E-10865896IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.31869903IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.1E-68691106IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007561.9E-7871905IPR002885Pentatricopeptide repeat
PfamPF130411.6E-15903952IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.551904938IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.5E-8906940IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.836939973IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.8E-7941975IPR002885Pentatricopeptide repeat
SuperFamilySSF819013.4E-89431143No hitNo description
PfamPF130412.7E-119731020IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.2359741008IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.8E-69761010IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.30610091039IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.6E-510111039IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.9610441078IPR002885Pentatricopeptide repeat
PfamPF130411.3E-910781126IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.27710791113IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.9E-610811114IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.29511141148IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003676Molecular Functionnucleic acid binding
GO:0005506Molecular Functioniron ion binding
GO:0005515Molecular Functionprotein binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 1182 aa     Download sequence    Send to blast
MAEMEISSSM AETNTQQNFL VKRKRNLPGN PDPEAEVIAL SPKTLMATNR FVCEICNKGF  60
QRDQNLQLHR RGHNLPWKLR QRTSNEVKKR VYVCPELTCV HHDPSRALGD LTGIKKHFCR  120
KHGEKKSYTV HSDWKAHMKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARSHPP  180
LMENTNAEED LKVDEAINKT ASSSSSPPPQ PLTPSTGVLS PVLSIQSSEL PAENQNQNQG  240
GVQLQQAQGT IPPVSTTPAT AISTATPSGS SSSKVFASVF PPASSVQHPH SPYSDILRAI  300
QTEQITTAEP MSLSLSSSLY LSSNGPALFQ EHSGHGHGQH YGSATTQPAL SATALLQKAA  360
QMGSTTSNNS FLRGLGLTMS SSTSAPDENS LARRTNALGH VKLESNINAD VPELGIQLPS  420
NGHSGFTDLM MCPSISHQTS MMFGSKPPTL DFLGLGTGAS GTPPSGFSAF LSSMEVIYIP  480
WKFENHFRKQ GIRGPGYRLI YGNTEEIKRQ ISEAESKSMA FNHDVLHRIA PQYYNWSAMY  540
GKTFLWWFGS KPRLAMSNPD MIKGLFMNKA VDKVKFDPQS KQLFGEGLVG LRGEQWALHR  600
RIANRAFNME VIKRKQSSHA LSFMEKTSML QREFKDVNSL NDAVCVFHQM VRKEPVPSVV  660
EFAKLLRVMI TMKKYSAVIS FFGEMRKLGI PFDDYILTIV INSFCLLGCA ENGFSVLGIF  720
LKSGVQFNVV TFSTLIRGLF EQNKIQDAMW LFRKLVTEKI CKVDEVMFGT VMNGLCKQGH  780
TQTALSLLRI MEQGDPKPNT IVYSIVVDAL CKDQMVGAAF NLFNEMKQKG IAPNVLTYSS  840
LVDGLCKFDQ WEKVRVLLDE MMCLNIFPNV HTFSMLVDAF CKKGMVEDAV EVLKIMIQKG  900
EHPDVVIYNA IMEGYCLRGE IDVARRVLDS MIDTGVKPDI FSYNILVNGY CRQKKLDEAM  960
HLNCEILQKG LKPDIVTYST ILQGLFEVGR VECSENLFTE MQNAGHSPDI YTCGIMLHGY  1020
LNNGQVEKAM SLFRRWEKQK EDTYILIYNT GNGGFFKIQK LDKARSIFDK LYSVGLHPDV  1080
ITYNVTVNGL CVEGLVDEAK ELLRKIEDNG CLPDNATSNL IVRGFLKSNK TNEAMALLKE  1140
IVGRGFPADK ATMSLLIELL LLIGEGPFLL NMIPELHLRN KK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A2e-9363811762447pentatricopeptide repeat protein dPPR-U10
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.21e-102pentatricopeptide (PPR) repeat-containing protein