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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00311.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 9650.71 Da PI: 6.5074 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.6e-08 | 11 | 54 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT++ + + a + + ++ +W+ +a+ +g ++t+k++k ++ Sme2.5_00311.1_g00015.1 11 WTAQQNKAFEMALAVYDKDtpdRWSNVAKAVGGNKTAKDVKRHY 54 *******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.098 | 3 | 58 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.4E-5 | 7 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-4 | 10 | 56 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.79E-6 | 10 | 54 | No hit | No description |
SuperFamily | SSF46689 | 1.42E-11 | 10 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-6 | 10 | 54 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MSSSQAGQFT WTAQQNKAFE MALAVYDKDT PDRWSNVAKA VGGNKTAKDV KRHYEILVHD 60 IDFIETGGVP FPNYIVTNAC TGGPTNNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-31 | 1 | 77 | 1 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018627251.1 | 5e-40 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | F4JVB8 | 4e-32 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A1J6JBP4 | 3e-39 | A0A1J6JBP4_NICAT; Protein radialis-like 1 | ||||
STRING | PGSC0003DMT400001883 | 2e-37 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-34 | RAD-like 1 |
Publications ? help Back to Top | |||
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