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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_00311.1_g00010.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
C3H |
Protein Properties |
Length: 381aa MW: 43959.7 Da PI: 9.3031 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00311.1_g00010.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 28.4 | 2.7e-09 | 14 | 37 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
++++C+f+++ G C++GdrC++ H
Sme2.5_00311.1_g00010.1 14 DRVNCPFYFKIGACRHGDRCSRLH 37
6899******************** PP
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2 | zf-CCCH | 19 | 2.4e-06 | 186 | 209 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ Cr + + C++G+ C+F+H
Sme2.5_00311.1_g00010.1 186 REATCRQYEE-NVCNRGGYCNFMHL 209
6789**9999.*************6 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHTKP SISPTLVLSN MYQRPDMITP 60 GVDPQGQPLD PRQIQRHFED FYEDLFEELS KYGEIENLNI CDNLADHMVG NVYGGRPCCK 120 CSSESYWKIL CSVSLVSTRQ LSFSSFTAFN FWRLCTILCC LLHLSVCFAH AGRPIIVDFS 180 PVTDFREATC RQYEENVCNR GGYCNFMHLK KISRELRRQL FGKSSRRRRS HSRSRSPRGN 240 RNYEERPQGG RGSGRRGGDD RYHDRGRRPR SRSPGRRSGH SRSPGGRRNR SPGREGSEER 300 RAKIEQWNRE REEAGSGRNH GGGTRREDRE GSAERRAKIE QWNREKEEAE SAKYNNFDAG 360 NGRNDGGNHY GEQFDDYPEQ Q
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Functional Description ? help
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Source |
Description |
UniProt | Necessary for the splicing of pre-mRNA (By similarity). Probably active at the 3' splice sites. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT014022 | 0.0 | BT014022.1 Lycopersicon esculentum clone 133084R, mRNA sequence. |
Publications
? help Back to Top |
- Day IS, et al.
Interactions of SR45, an SR-like protein, with spliceosomal proteins and an intronic sequence: insights into regulated splicing. Plant J., 2012. 71(6): p. 936-47 [PMID:22563826] - Kim DW,Jeon SJ,Hwang SM,Hong JC,Bahk JD
The C3H-type zinc finger protein GDS1/C3H42 is a nuclear-speckle-localized protein that is essential for normal growth and development in Arabidopsis. Plant Sci., 2016. 250: p. 141-153 [PMID:27457991] - Park HY, et al.
The Arabidopsis splicing factors, AtU2AF65, AtU2AF35, and AtSF1 shuttle between nuclei and cytoplasms. Plant Cell Rep., 2017. 36(7): p. 1113-1123 [PMID:28432478]
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