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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00298.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 38319.5 Da PI: 7.8185 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.4 | 9.5e-52 | 19 | 145 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfr h tdeel+++yL +kv ++++ + +i +vd++k+ePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkat Sme2.5_00298.1_g00016.1 19 LPPGFRLHHTDEELITHYLSNKVVDSNFIT-IAIGDVDLNKIEPWDLPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKAT 103 79************************9766.78***************888999******************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 gkd+e+++ +++l+g+kktLvfykgrapkgekt+Wv+heyrle Sme2.5_00298.1_g00016.1 104 GKDREIFR-GKSLIGMKKTLVFYKGRAPKGEKTNWVIHEYRLE 145 ********.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-59 | 14 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.38 | 19 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-25 | 20 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MENYSGVVKD DDHQDQMELP PGFRLHHTDE ELITHYLSNK VVDSNFITIA IGDVDLNKIE 60 PWDLPWKAKM GEKEWYFFCV RDKKYPTGLR TNRATAAGYW KATGKDREIF RGKSLIGMKK 120 TLVFYKGRAP KGEKTNWVIH EYRLEGKLSL ENLPKTAKNE WVICRVFQKS CGGKKIHISG 180 LLKLNSNENE IGNSFLPPLT DSGAASKSSH VHCFSNFSAP QNNPSPFHLL SNPMDNFPLL 240 SNPNTFSCNQ IAPFTTNPGS FGVQDPSSIL LRASLENYSQ NFKKEEIFNV PQDTGVISTD 300 MNTGISSIAS NLDMKRRFLE DQVPSAPMFG LQGLDCLWSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-51 | 8 | 175 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-51 | 8 | 175 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-51 | 8 | 175 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-51 | 8 | 175 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-51 | 8 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-51 | 8 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-51 | 8 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-51 | 8 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-51 | 8 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-51 | 8 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-51 | 8 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-51 | 8 | 175 | 9 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-51 | 8 | 175 | 6 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-51 | 8 | 175 | 6 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-141 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354772.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-116 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | M1D6G2 | 0.0 | M1D6G2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400083083 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-118 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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