PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00283.1_g00008.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

SBP

Protein Properties

Length: 996aa MW: 110696 Da PI: 8.2963

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00283.1_g00008.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	124.9	3.3e-39	143	220	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls ak+yhrrhkvCevhska+ +lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Sme2.5_00283.1_g00008.1 143 VCQVQDCQADLSCAKDYHRRHKVCEVHSKAARALVGNVMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNRRRRKTHP 220 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-31	137	205	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.812	141	218	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.32E-36	142	222	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.6E-28	144	217	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	7.19E-7	768	878	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.5E-7	769	893	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.12E-8	770	877	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence Send to blast
MESSNFHGPV VSNLEVGGKM SREWDLNDWV WDGDRFIAEP LNPLSSDCRG KQLFPIGSEI 60 PETKGISNSD ELTLGNDRGR KELEKRRRTI VIDDDGERNG EAGSLNLKLG EQLYPVMEGE 120 VEKWEGKSGK KSKIGGGSVN RAVCQVQDCQ ADLSCAKDYH RRHKVCEVHS KAARALVGNV 180 MQRFCQQCSR FHVLEEFDEG KRSCRRRLAG HNRRRRKTHP ENVPNGASMN NEGGSNYLLI 240 SLLRILANMQ CDGKVCVHFT LLGPHLWDST GYVVVVASTR TLSLRGDGKD SLRPNGDCLT 300 IPASKVTKKR MDTSDVERGI SQNPCASRPN SLCCRKESLP INTNASATTS APLKLNIDLN 360 NIYDDSQGGI QKLQNSGAFA NPGAASSSCP LWISHEPHKS SSTRTSWNSG STSSLSPSSS 420 SGEAQYKDDF SLNYKIATNF QSRTDRIVFK LFGKDPGEIP TALRKQVLDW LSHSPADIES 480 YIRPGCIILT IYLRMDKAIW EELYCDLNSS LRKLLNASAG SFWQTGWVYT RVNDRVAFLF 540 NGKVVLDTPL PSHRSCGISI VKPIAVCASE KVQFLVKGFN LSRPTTRLLC ALEGKYLVQG 600 NCTDMMVGAD SSMDHEEIQS VSFPCIVPNV TGRGFIEVED HGLSSNFFPF IVAEKDVCSE 660 IRTLESIIEV DKMADGFMQG TEEFQARDQA LDFLHELGWL LHRSHLKFRV GSGVNLNLFP 720 FQRFKRLIDF SIDHDWCAVV KKLLDVFFNG IVDVGQQSSL DVPLREVGIL HRAVRRKCRS 780 MVDVLLKYRY HGAFDNLGLQ KQQDEHGYLF RPDAVGPGGL TPLHVVASLA GFENLLDALI 840 DDPGQVGLEA WKSARDSTGL TPNDYACLRG HYSYVHMVQK KINQKTGDGH VVLDIPGSLL 900 DNNLKQKVSD GLKSGKVASF QTEKSLGKPI PRQCRQCKQK LSYGNSGTSL VYKPAMLSMV 960 AIAAICVCVA LLFKSSPEVL YSFRPFRWEL LKYGSM

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence Send to blast

MESSNFHGPV VSNLEVGGKM SREWDLNDWV WDGDRFIAEP LNPLSSDCRG KQLFPIGSEI  60
PETKGISNSD ELTLGNDRGR KELEKRRRTI VIDDDGERNG EAGSLNLKLG EQLYPVMEGE  120
VEKWEGKSGK KSKIGGGSVN RAVCQVQDCQ ADLSCAKDYH RRHKVCEVHS KAARALVGNV  180
MQRFCQQCSR FHVLEEFDEG KRSCRRRLAG HNRRRRKTHP ENVPNGASMN NEGGSNYLLI  240
SLLRILANMQ CDGKVCVHFT LLGPHLWDST GYVVVVASTR TLSLRGDGKD SLRPNGDCLT  300
IPASKVTKKR MDTSDVERGI SQNPCASRPN SLCCRKESLP INTNASATTS APLKLNIDLN  360
NIYDDSQGGI QKLQNSGAFA NPGAASSSCP LWISHEPHKS SSTRTSWNSG STSSLSPSSS  420
SGEAQYKDDF SLNYKIATNF QSRTDRIVFK LFGKDPGEIP TALRKQVLDW LSHSPADIES  480
YIRPGCIILT IYLRMDKAIW EELYCDLNSS LRKLLNASAG SFWQTGWVYT RVNDRVAFLF  540
NGKVVLDTPL PSHRSCGISI VKPIAVCASE KVQFLVKGFN LSRPTTRLLC ALEGKYLVQG  600
NCTDMMVGAD SSMDHEEIQS VSFPCIVPNV TGRGFIEVED HGLSSNFFPF IVAEKDVCSE  660
IRTLESIIEV DKMADGFMQG TEEFQARDQA LDFLHELGWL LHRSHLKFRV GSGVNLNLFP  720
FQRFKRLIDF SIDHDWCAVV KKLLDVFFNG IVDVGQQSSL DVPLREVGIL HRAVRRKCRS  780
MVDVLLKYRY HGAFDNLGLQ KQQDEHGYLF RPDAVGPGGL TPLHVVASLA GFENLLDALI  840
DDPGQVGLEA WKSARDSTGL TPNDYACLRG HYSYVHMVQK KINQKTGDGH VVLDIPGSLL  900
DNNLKQKVSD GLKSGKVASF QTEKSLGKPI PRQCRQCKQK LSYGNSGTSL VYKPAMLSMV  960
AIAAICVCVA LLFKSSPEVL YSFRPFRWEL LKYGSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-29	137	217	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006355718.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	M1CL80	0.0	M1CL80_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400069826	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1