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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00276.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 306aa MW: 34740.5 Da PI: 5.5071 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.8e-18 | 43 | 90 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 y GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++ Sme2.5_00276.1_g00007.1 43 YLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMR 90 88******.**********965...5***********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.0E-28 | 42 | 110 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.81E-26 | 42 | 103 | No hit | No description |
PROSITE profile | PS51032 | 19.691 | 42 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-25 | 43 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-17 | 43 | 90 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-8 | 43 | 54 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-11 | 43 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MDLTKSSTSS SSTTKKTKPR KNNGGSTQRV EQIAEEQQSN FRYLGVRRRP WGRYAAEIRD 60 PTTKERHWLG TFDTAEEAAL AYDRAARSMR VNSKSNKPTR TNFVYSDMPH GYSVTRIVSP 120 DEEYQHYHHH HHQQQQLLIF DQTENVLPPN VDYGAHFNHF SISNMNNVGG DSSGGESALQ 180 QYYNPNYDIH MKDDYRYDGN TTSTELPPLP EDITSSCYYL SDQNTQFPTT TISEMGYNNS 240 SSNNNNLLNE MIIGTHNEYQ YGGSTITTAS STTTTTAGSF SCFGFDDSLQ PLQDESNNNS 300 LDYWFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-17 | 43 | 90 | 3 | 51 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-17 | 43 | 102 | 6 | 67 | ATERF1 |
3gcc_A | 2e-17 | 43 | 102 | 6 | 67 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343508.1 | 1e-144 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A2G2ZGD8 | 1e-143 | A0A2G2ZGD8_CAPAN; Ethylene-responsive transcription factor ESR2 | ||||
STRING | Solyc11g045680.1.1 | 1e-136 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5383 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 5e-31 | ERF family protein |