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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00276.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 306aa MW: 34818.6 Da PI: 5.2974 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.2e-18 | 43 | 90 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 y GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++ Sme2.5_00276.1_g00006.1 43 YLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMR 90 88******.**********933...5***********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.4E-26 | 42 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.585 | 42 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.37E-25 | 42 | 103 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-25 | 43 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 43 | 54 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-17 | 43 | 90 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.4E-12 | 43 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MDFIKSSTSS SSTTKNTKPR KNNGGSTQSV KQIAEEQQSN FRYLGVRRRP WGRYAAEIRD 60 PNTKERHWLG TFDTAEEAAL AYDRAARSMR VNTKSNKPIR TNFVYSDMPH GNSVTCIVSP 120 DEEYQHHHHN HHHHQQLLVF GQTENILPPN VDYEAHFSHF SINNMNNIGG GDQEFALQQY 180 YNPNYDTHME DGYRYDSNNT ISTELPPLPE DITSSCYYLS DQNTQFPTTT ISEMGYNNSS 240 SNNNNNLLNE MIIGTNNEYQ FGESTVTTAS STTTTAAGSF NYFGFDDCLQ PLQDESNNNS 300 LGYWFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-18 | 43 | 102 | 6 | 67 | ATERF1 |
3gcc_A | 6e-18 | 43 | 102 | 6 | 67 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC247070 | 1e-167 | AC247070.6 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-56c7 map 11, complete sequence. | |||
GenBank | AC247072 | 1e-167 | AC247072.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-53f5 map 11, complete sequence. | |||
GenBank | AC247105 | 1e-167 | AC247105.3 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-68l9 map 11, complete sequence. | |||
GenBank | AC247114 | 1e-167 | AC247114.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-10d16 map 11, complete sequence. | |||
GenBank | AC247121 | 1e-167 | AC247121.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-18j22 map 11, complete sequence. | |||
GenBank | AC247131 | 1e-167 | AC247131.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-49n18 map 11, complete sequence. | |||
GenBank | HG975523 | 1e-167 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554343.1 | 1e-150 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A2G2ZGD8 | 1e-151 | A0A2G2ZGD8_CAPAN; Ethylene-responsive transcription factor ESR2 | ||||
STRING | Solyc11g045680.1.1 | 1e-141 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5383 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 4e-31 | ERF family protein |