PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00276.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 306aa    MW: 34818.6 Da    PI: 5.2974
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00276.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-184390354
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                             y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++
  Sme2.5_00276.1_g00006.1 43 YLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMR 90
                             88******.**********933...5***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.4E-2642104IPR001471AP2/ERF domain
PROSITE profilePS5103219.58542104IPR001471AP2/ERF domain
CDDcd000181.37E-2542103No hitNo description
Gene3DG3DSA:3.30.730.101.8E-2543103IPR001471AP2/ERF domain
PRINTSPR003671.3E-84354IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-174390IPR016177DNA-binding domain
PfamPF008476.4E-124390IPR001471AP2/ERF domain
PRINTSPR003671.3E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDFIKSSTSS SSTTKNTKPR KNNGGSTQSV KQIAEEQQSN FRYLGVRRRP WGRYAAEIRD  60
PNTKERHWLG TFDTAEEAAL AYDRAARSMR VNTKSNKPIR TNFVYSDMPH GNSVTCIVSP  120
DEEYQHHHHN HHHHQQLLVF GQTENILPPN VDYEAHFSHF SINNMNNIGG GDQEFALQQY  180
YNPNYDTHME DGYRYDSNNT ISTELPPLPE DITSSCYYLS DQNTQFPTTT ISEMGYNNSS  240
SNNNNNLLNE MIIGTNNEYQ FGESTVTTAS STTTTAAGSF NYFGFDDCLQ PLQDESNNNS  300
LGYWFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1843102667ATERF1
3gcc_A6e-1843102667ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2470701e-167AC247070.6 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-56c7 map 11, complete sequence.
GenBankAC2470721e-167AC247072.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-53f5 map 11, complete sequence.
GenBankAC2471051e-167AC247105.3 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-68l9 map 11, complete sequence.
GenBankAC2471141e-167AC247114.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-10d16 map 11, complete sequence.
GenBankAC2471211e-167AC247121.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-18j22 map 11, complete sequence.
GenBankAC2471311e-167AC247131.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-49n18 map 11, complete sequence.
GenBankHG9755231e-167HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554343.11e-150PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A2G2ZGD81e-151A0A2G2ZGD8_CAPAN; Ethylene-responsive transcription factor ESR2
STRINGSolyc11g045680.1.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-31ERF family protein