PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00266.1_g00018.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 1765aa    MW: 193900 Da    PI: 5.6645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00266.1_g00018.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.2e-07881922346
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              +WT  E e+++d    lG++ +++Ia+ +  ++t  +c+++++k
  Sme2.5_00266.1_g00018.1 881 PWTSKETEIFIDKLCSLGKD-FRKIASFLD-HKTTADCIEFYYK 922
                              8*****************99.*********.***********98 PP
2Myb_DNA-binding26.91.1e-0810991139345
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                                WT eE   +++a   +G++ +  ++r++g +R++ qck ++ 
  Sme2.5_00266.1_g00018.1 1099 DWTDEEKSTFIQALSAYGKD-FVMVSRCVG-TRSRDQCKIFFS 1139
                               5*****************99.*********.********8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.53E-12865925IPR009057Homeodomain-like
PROSITE profilePS5129314.265877928IPR017884SANT domain
SMARTSM007175.1E-6878926IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-4881922IPR009057Homeodomain-like
PROSITE profilePS5129311.78210951146IPR017884SANT domain
SMARTSM007178.7E-810961144IPR001005SANT/Myb domain
SuperFamilySSF466894.21E-1010981147IPR009057Homeodomain-like
PfamPF002492.4E-610991138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-410991140IPR009057Homeodomain-like
CDDcd001671.02E-511001138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1765 aa     Download sequence    Send to blast
MPPEPLPWDR KDFFKERKHD RSEVLSGGPR WKEPTPHHHY TSSRWIPDIR SRGPPGHGKQ  60
GNWHMYPEEP RHGFMPSRPN EKILEDENCR QSRGDGGKYG RNSRDNRSFG QRDWRSGHSW  120
EAASPSGSAR QNDATNDQRS MDVMVPHSFS NPHSEHVNTC DQSHSRDQHN KSASVNGTAS  180
TGQRIERESS LVSIEWRPLK WTRSGSLSSR GSLSHSGSSK SMGVDSNETK PELQLGNSKA  240
VQSLTGDATA CVTSAAPSEE TTSRKKQRLG WGEGLAKYEK KKVEGPEDNA VKVGASISGD  300
SVEPGHSQPL NLVDRSPRVV FPDCPSPATP SSVACSSSPG ERKYAGKDRI YVVVRVKESE  360
LSGTVFDIFF GLYVSVLAML TVFMDLPGLE DKQLVKATNI DQDIGNLCGS PNVVFQYHSE  420
GSSFNLENWD LAQISNLNSS INELLQSEDP SSVDSANKLL IWKSDITKAL EKTEVEIDSL  480
ENELKILISG PENIQLVPSA SSSPPKDRFA NSHEDQGTTS NIASRPAPLL VDIPGDLIGE  540
EEANILGNEQ TEVKVEDIDS PGSATSKFVE LHSEKDVAPV DAMKYDGMLI SDDSKSRRLN  600
VNLCSFIEEE AKSRSLDVNL CNFNEEKARD TLACGESSQP TASYSHSASN GSLNCGEDAL  660
YNLILTANRD SAERAFEVFK NLLPASKCSL DFSRAIRGCS LQIDPVVKER FAKRKQFQKF  720
KEKIIALKFR VHQHLWKEDI RMLSVRKFRA KSQKKFDFSL RPVPLGNQKH RSTVRSRFST  780
TGWSLCQLAF RQLIELSQCF NIGRSQGDDS VGSFGLVPSS EILNFTSRLL SEHGTKVYRN  840
TLRMPALILD QKERTMSRFI SKNNLVEDPC AVEEERGLIN PWTSKETEIF IDKLCSLGKD  900
FRKIASFLDH KTTADCIEFY YKNHKSDCFE KTRRKSDYTK QAKVCSANTY LIASSGKRWN  960
REANSVSLDI LGAASAIAAN VEDSIEIQPK GTSNYTHRTV TEYKTSRLSE LERSNSLDVC  1020
HSERETVAAD VLAGICGSLS SEAMSSCITS SVDPGEGNQE WKQQKVGSLT RLPRTPEVTL  1080
SVDDETCSDE SCGEMDPTDW TDEEKSTFIQ ALSAYGKDFV MVSRCVGTRS RDQCKIFFSK  1140
ARKCLGLDKI LPGSGNLERQ DINGGGDPDA CVMETKLLCN EKSSLMLEDV SDLCMKGGIS  1200
KPELTSSDDK DGSGELDSVD TELMSKNSVQ VNCYDADKQE LEFNSDREIQ IGVCIGSGRG  1260
DENMVTVSRE GVEIDGDASV NGLPDTPCPN EISAKHLGEE IRGVVSSLEH DLEDRKAEIA  1320
EVSRSNCSLE DRKPNMVLSG NYSCLAAAGG GESCPLNGSQ IMTHLESDSE CKLDMNFLET  1380
NISVQKKQMS EASNSDKLSK LVLENVGDKQ CENATQSAEQ PLSSASRLAQ VESCQILGSY  1440
LLGESALTES GDPGCRASAP LQEIQKVGGN LQFDTFSTSG CFLQKCNGTN LGGGSVSDLL  1500
IPNREQTGGN SSNVEKPCRN GDVKLFGQIL SKPSSKANPS SNAQRSDGIN QQLKVVNDSF  1560
SANHSLDGNS ATTKFERNNF LGSENHPVRN FGFRDGNMIQ TGFSSLPDSA ILLAKYPAAF  1620
GNYALSSTKL EQPTLHGIVK TTERNLNGPP VFPARDSSSN NGVAAADYQM YRNRDVQPFT  1680
IEMKQRQDTV FSEMQRRNGF DIVGGMQQQG RGVVVGRGGI LQCTGVSDPV AAIKMHYAKA  1740
EQFSGQAASI IREDDSWRSK GDVSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340031.10.0PREDICTED: uncharacterized protein LOC102602320
TrEMBLA0A0V0J0A30.0A0A0V0J0A3_SOLCH; Putative ovule protein
STRINGXP_009803598.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59042332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-136MYB family protein