PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00254.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24316.8 Da PI: 7.1794 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.2 | 3.7e-17 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien ++r++++ kR++g+l KA+EL +LCd+e a++++s+ Sme2.5_00254.1_g00002.1 10 FIENITKRKTSYRKRQKGLLSKAHELNTLCDVELAIVVYSP 50 8***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.586 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.2E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.76E-18 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.02E-20 | 2 | 57 | No hit | No description |
PRINTS | PR00404 | 3.1E-12 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-16 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-12 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-12 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MTRAKVKLDF IENITKRKTS YRKRQKGLLS KAHELNTLCD VELAIVVYSP YHEAPKVHDA 60 EGSTLHAPQP ISGVIVGSGT SFDMPRAPLL ASVGDLSQVP SSFSSHMFPL IPHQMDLRRA 120 LEMTHPIPPT TMAYPMPSSA NDPPMSTLVF PPIAPKIHPS MNIPSINASM PIDNNHNRSF 180 ENPSFSQLLS LSDDDIRTLL DDTSFNINVQ DPNHHHRNL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010319833.1 | 2e-34 | agamous-like MADS-box protein AGL65 | ||||
TrEMBL | M1CD92 | 1e-38 | M1CD92_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400065010 | 2e-39 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1329 | 10 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 6e-14 | M-type_MADS family protein |