PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00250.1_g00014.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 236aa    MW: 26655.1 Da    PI: 6.2862
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00250.1_g00014.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.7e-194898256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              y+GVr++  +++Wv+e+r+ps+   +kr++lg++ t+e+Aa+a++ a+++l+g+
  Sme2.5_00250.1_g00014.1 48 IYRGVRRRN-NNKWVCEVREPSQ---QKRIWLGTYPTPEMAARAHDVAALALRGN 98
                             69****887.8*********954...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-144797IPR001471AP2/ERF domain
CDDcd000189.68E-3047107No hitNo description
Gene3DG3DSA:3.30.730.105.8E-2948107IPR001471AP2/ERF domain
PROSITE profilePS5103221.62848105IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2148107IPR016177DNA-binding domain
SMARTSM003801.3E-2748111IPR001471AP2/ERF domain
PRINTSPR003672.8E-74960IPR001471AP2/ERF domain
PRINTSPR003672.8E-77187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNNNLMSCLS DSNTINLEEA YGGVFPLASS QPKKRAGRKK FKETRHPIYR GVRRRNNNKW  60
VCEVREPSQQ KRIWLGTYPT PEMAARAHDV AALALRGNLA TLNFADSHWR LPMPVSKDPK  120
DIRQAAIKAA KAFCQNTELV GVDSNSIEEV KYQEVDVARA NSGSSSDFGA KELNMDMENI  180
LCCNSGEDNE ILEMEGWREK MAEGLLFSPT PRLSSCFSWD NMEISDIEVS LWSYNI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083759.11e-133dehydration-responsive element-binding protein 1E-like
SwissprotQ9FJ933e-55DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A3Q7HI061e-131A0A3Q7HI06_SOLLC; Uncharacterized protein
STRINGSolyc08g007820.1.11e-132(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-46C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]