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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00250.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26655.1 Da PI: 6.2862 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.7e-19 | 48 | 98 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +++Wv+e+r+ps+ +kr++lg++ t+e+Aa+a++ a+++l+g+ Sme2.5_00250.1_g00014.1 48 IYRGVRRRN-NNKWVCEVREPSQ---QKRIWLGTYPTPEMAARAHDVAALALRGN 98 69****887.8*********954...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.3E-14 | 47 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.68E-30 | 47 | 107 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.8E-29 | 48 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.628 | 48 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-21 | 48 | 107 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-27 | 48 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-7 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-7 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MNNNLMSCLS DSNTINLEEA YGGVFPLASS QPKKRAGRKK FKETRHPIYR GVRRRNNNKW 60 VCEVREPSQQ KRIWLGTYPT PEMAARAHDV AALALRGNLA TLNFADSHWR LPMPVSKDPK 120 DIRQAAIKAA KAFCQNTELV GVDSNSIEEV KYQEVDVARA NSGSSSDFGA KELNMDMENI 180 LCCNSGEDNE ILEMEGWREK MAEGLLFSPT PRLSSCFSWD NMEISDIEVS LWSYNI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015083759.1 | 1e-133 | dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | Q9FJ93 | 3e-55 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A3Q7HI06 | 1e-131 | A0A3Q7HI06_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g007820.1.1 | 1e-132 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-46 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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