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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00250.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 27061.9 Da PI: 4.5649 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.4e-19 | 53 | 103 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +++Wv+e+r+pse +kr++lg++ t+e+Aa+a++ a+++l+g+ Sme2.5_00250.1_g00013.1 53 IYRGVRRRN-NNKWVCEVREPSE---QKRIWLGTYPTPEMAARAHDVAALALRGN 103 69****887.8*********976...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.98E-29 | 52 | 112 | No hit | No description |
Pfam | PF00847 | 9.7E-14 | 52 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.588 | 53 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-27 | 53 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-29 | 53 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-21 | 53 | 112 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.9E-7 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-7 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MTSNTTNLER DHNLQETSSS SGGAQDEGAF QLASSRPKKC AGRKKFKETR HPIYRGVRRR 60 NNNKWVCEVR EPSEQKRIWL GTYPTPEMAA RAHDVAALAL RGNLATLNFA DSSWRLEVPT 120 SKDPEELRQA AMKAAEAFRQ DTELVGVDYM NEEMKSQEDI VVGGANGNDN NIQNMEMENI 180 LCCNNWGENN EMLEIEGSSS WQEKMAEGHL FSPTPCLDSC FSWDDVESDV EVTLWNYNM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 2e-65 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 2e-65 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358389.1 | 1e-132 | PREDICTED: dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | M1AXQ1 | 1e-131 | M1AXQ1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400032623 | 1e-131 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 9e-45 | C-repeat-binding factor 4 |