PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00228.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 376aa    MW: 41467.8 Da    PI: 9.0166
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00228.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC811.1e-25149192144
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                              d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgrsrsrk++e
  Sme2.5_00228.1_g00005.1 149 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRSRSRKPVE 192
                              79***************************************987 PP
2QLQ431.3e-1578112236
                      QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                              +F+ +Q+q+L+ Q l++++++a++PvP+eLl  ++
  Sme2.5_00228.1_g00005.1  78 YFSLDQWQELELQSLIFRHFIAGAPVPSELLHLVK 112
                              7*****************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.5E-677113IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.70178113IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.4E-1078111IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.141149193IPR014977WRC domain
PfamPF088791.2E-21150192IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDFNLKQWRN EHESENQESP TKLPRLVLDF HSLSSSVPTD SPALPLFVSE PTTTSTKLMS  60
DSTTTATTKF SRMGSGGYFS LDQWQELELQ SLIFRHFIAG APVPSELLHL VKKSIISSPP  120
PPPSYYYSHP FQQYPHYQQA WYWGRAAMDP EPGRCRRTDG KKWRCSRDVV AGQKYCERHV  180
HRGRSRSRKP VEIPTPANNG SRNKDNNNTL SHHQAFGKMA GHAAAPHFSL SGHSPSTNAP  240
FHIDQRSSES TKKGPPLEAQ KDVSGGQILR HFFDDWPRQQ LQEGDNAATS LSISMPGGGG  300
NPSSDFSLKL STGNDYDSGT QVSNIDRTTW GTSHQVASMG GPLAEALRSS TTNSSPTSVL  360
HQLARGSTSE ASYIST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139770.0BT013977.1 Lycopersicon esculentum clone 133022R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339314.10.0PREDICTED: growth-regulating factor 3-like
TrEMBLM1CQP20.0M1CQP2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000726280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.15e-77growth-regulating factor 4