 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_00211.1_g00016.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
G2-like |
| Protein Properties |
Length: 175aa MW: 19769.4 Da PI: 10.2783 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00211.1_g00016.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 103.7 | 1.1e-32 | 49 | 102 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
Sme2.5_00211.1_g00016.1 49 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 102
9****************************************************7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 175 aa
Download sequence Send
to blast |
MVANRFHNQH QHSQYYNGVG LGSPSSHENS LMRSRFLPKF PAKRSMRAPR MRWTTSLHAR 60
FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKTTDKSA ASSGQSDGSG 120
EEDLLAIDRI LDQRGPSDGC DDPSTTLWSN SSSRKLEQSP ISKKKLRREL YLLEL
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4k_A | 5e-18 | 50 | 104 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 5e-18 | 50 | 104 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 5e-18 | 50 | 104 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 5e-18 | 50 | 104 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 5e-18 | 50 | 104 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 5e-18 | 50 | 104 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 5e-18 | 50 | 104 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 5e-18 | 50 | 104 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 5e-18 | 50 | 104 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 5e-18 | 50 | 104 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 5e-18 | 50 | 104 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 5e-18 | 50 | 104 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC239583 | 2e-52 | AC239583.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0201O22, complete sequence. |
| GenBank | HG975444 | 2e-52 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
| GenBank | HG975517 | 2e-52 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
