PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00209.1_g00014.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 691aa    MW: 75932.9 Da    PI: 6.9636
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00209.1_g00014.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-23121222199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+
  Sme2.5_00209.1_g00014.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGDTWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDS 204
                              89****************************996555555..89******************************************* PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              +vF   + +++ l+v+++r+
  Sme2.5_00209.1_g00014.1 205 IVFL--RAENGDLCVGIRRA 222
                              ****..4488999****997 PP
2Auxin_resp114.31.1e-37284367183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                              aa+ a+++++Fev+Y+Prast+eF+vk++ v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  Sme2.5_00209.1_g00014.1 284 AANLAASGQPFEVIYYPRASTPEFCVKASLVKSALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVSDPIRWPDSPWRLLQ 367
                              7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-37112225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-29114224IPR015300DNA-binding pseudobarrel domain
CDDcd100175.34E-21120221No hitNo description
PfamPF023621.5E-21121222IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028121223IPR003340B3 DNA binding domain
SMARTSM010192.9E-21121223IPR003340B3 DNA binding domain
PfamPF065071.1E-32284367IPR010525Auxin response factor
PROSITE profilePS5174519.553603683IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MITFMDPKDK VKEIEKCLDS QLWHACAGSM VQMPSVSSKV FYFPQGHSEH ASGNVDFRSS  60
IRIPSYIPCK VSEIKYMADP ETDEVFAKIR LIPVSRNEVE FDDDGVVGMN GSDNQDKPTS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGDT WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGMGGGP ETSSGWNPAG  240
GNCMVPYGGF SSFLREDENK LMRNGNGSNS GNKGKVKAES VIEAANLAAS GQPFEVIYYP  300
RASTPEFCVK ASLVKSALQI RWCSGMRFKM PFETEDSSRI SWFMGTISSV QVSDPIRWPD  360
SPWRLLQVTW DEPDLLQNVK RVSPWLVELV SNMPTIHLSP FSPPRKKLRL PQHPDFPLDG  420
PLPMPAFSGN HLLGPNSPFG CLPDNTPAGM QGARHAQYGL SLSDLHFNKL HSSLFPVGFP  480
PLDQAAAAPR RPLNSPMISK PSNNENISCL LTMGNSAHSM KKSDIGKAPQ LVLFGQPILT  540
EQQISLSCSG DTVSTVRTGN SSSDGNADKV GNVSDGSGSA LNQRGLTERS PCDTFHSEPN  600
TEIGHCKVFM ESEDVGRTLD LSLLGSYEEL CRKLANMFGI DNSEMLNHVL YRDPNGAVKQ  660
LGDEPFSDFM RTARRLTILT DSSSDNVGVR E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-82838841388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542732.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G2VZR80.0A0A2G2VZR8_CAPBA; Auxin response factor
TrEMBLA0A2G3BJ950.0A0A2G3BJ95_CAPCH; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]