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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_00209.1_g00014.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
ARF |
Protein Properties |
Length: 691aa MW: 75932.9 Da PI: 6.9636 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00209.1_g00014.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 73.5 | 2.5e-23 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79
f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+
Sme2.5_00209.1_g00014.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGDTWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDS 204
89****************************996555555..89******************************************* PP
EEEEE-SSSEE..EEEEE-S CS
B3 80 vvFkldgrsefelvvkvfrk 99
+vF + +++ l+v+++r+
Sme2.5_00209.1_g00014.1 205 IVFL--RAENGDLCVGIRRA 222
****..4488999****997 PP
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2 | Auxin_resp | 114.3 | 1.1e-37 | 284 | 367 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
aa+ a+++++Fev+Y+Prast+eF+vk++ v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
Sme2.5_00209.1_g00014.1 284 AANLAASGQPFEVIYYPRASTPEFCVKASLVKSALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVSDPIRWPDSPWRLLQ 367
7899******************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 691 aa
Download sequence Send
to blast |
MITFMDPKDK VKEIEKCLDS QLWHACAGSM VQMPSVSSKV FYFPQGHSEH ASGNVDFRSS 60 IRIPSYIPCK VSEIKYMADP ETDEVFAKIR LIPVSRNEVE FDDDGVVGMN GSDNQDKPTS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGDT WKFRHIYRGT 180 PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGMGGGP ETSSGWNPAG 240 GNCMVPYGGF SSFLREDENK LMRNGNGSNS GNKGKVKAES VIEAANLAAS GQPFEVIYYP 300 RASTPEFCVK ASLVKSALQI RWCSGMRFKM PFETEDSSRI SWFMGTISSV QVSDPIRWPD 360 SPWRLLQVTW DEPDLLQNVK RVSPWLVELV SNMPTIHLSP FSPPRKKLRL PQHPDFPLDG 420 PLPMPAFSGN HLLGPNSPFG CLPDNTPAGM QGARHAQYGL SLSDLHFNKL HSSLFPVGFP 480 PLDQAAAAPR RPLNSPMISK PSNNENISCL LTMGNSAHSM KKSDIGKAPQ LVLFGQPILT 540 EQQISLSCSG DTVSTVRTGN SSSDGNADKV GNVSDGSGSA LNQRGLTERS PCDTFHSEPN 600 TEIGHCKVFM ESEDVGRTLD LSLLGSYEEL CRKLANMFGI DNSEMLNHVL YRDPNGAVKQ 660 LGDEPFSDFM RTARRLTILT DSSSDNVGVR E
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |