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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_00204.1_g00010.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
C3H |
Protein Properties |
Length: 357aa MW: 38994.2 Da PI: 7.0149 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00204.1_g00010.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 29.6 | 1.2e-09 | 103 | 127 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC+ f++ G C+y +C+FaHg
Sme2.5_00204.1_g00010.1 103 FKTKLCCKFRA-GVCPYVTNCNFAHG 127
69*********.*************8 PP
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2 | zf-CCCH | 18.7 | 3.2e-06 | 182 | 202 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26
C+ f+ C+yGd+C+F H+
Sme2.5_00204.1_g00010.1 182 CKKFYTEEGCPYGDSCTFLHD 202
99999999************7 PP
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3 | zf-CCCH | 42.9 | 7.9e-14 | 236 | 261 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt++C+ + tG+C++G++C+FaHg
Sme2.5_00204.1_g00010.1 236 WKTRICNKWETTGYCPFGSKCHFAHG 261
8************************8 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-14 | 100 | 135 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-8 | 100 | 133 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.709 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 102 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-7 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.85 | 176 | 203 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.328 | 176 | 204 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-7 | 177 | 204 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-8 | 178 | 204 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-17 | 231 | 266 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-10 | 232 | 266 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-8 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-11 | 236 | 261 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MDFTGDAGFT GGNVIPDSTA GGSGFDSWGL NFSDQAVWAT EDDYKAWNSG PFCETPSNSS 60 QDGRHSQNRS GSEPPSKKSR NVQDSDARVI VTSSSKAIGK MFFKTKLCCK FRAGVCPYVT 120 NCNFAHGIEE LRKPPPNWQE IVAAHENERG VMVEMREEHQ IPILSSPDLR GESQRSAKGR 180 HCKKFYTEEG CPYGDSCTFL HDEQSRSRES VAISVTPTVG GFGNNATGAT QKPSNWKTRI 240 CNKWETTGYC PFGSKCHFAH GAAELNKFGG GPAETEGKDY VSVPPESKQG GGPLRATEST 300 VPSAIPALHT EVYHLGQGVQ VPRPTGIADR PGQRFFQKWK GPDKISKIYG DWIDDLE
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT014073 | 0.0 | BT014073.1 Lycopersicon esculentum clone 133173F, mRNA sequence. |