PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00196.1_g00019.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 914aa    MW: 101035 Da    PI: 6.2932
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00196.1_g00019.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23127228199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+
  Sme2.5_00196.1_g00019.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPVQ--ELIGKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDS 210
                              99****************************996555544..8999***************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              v+F   ++++ +l+++++r+
  Sme2.5_00196.1_g00019.1 211 VIFI--WNDNNQLLLGIRRA 228
                              ****..7777778***9997 PP
2Auxin_resp112.25e-37253336183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aahaa+t+s F++++nPra++seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+W+s+k
  Sme2.5_00196.1_g00019.1 253 AAHAAATNSRFTIFFNPRACPSEFVIPLGKYVKAVYhTRVSVGMRFRMLFETEESSIRRYMGTITGIGDLDPVRWPNSHWQSVK 336
                              79*********************************9789*****************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-46112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-41121242IPR015300DNA-binding pseudobarrel domain
CDDcd100177.80E-21126227No hitNo description
PROSITE profilePS5086312.788127229IPR003340B3 DNA binding domain
SMARTSM010193.7E-24127229IPR003340B3 DNA binding domain
PfamPF023629.3E-22127228IPR003340B3 DNA binding domain
PfamPF065073.2E-32253335IPR010525Auxin response factor
PROSITE profilePS5174518.37770864IPR000270PB1 domain
SuperFamilySSF542772.94E-6790855No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MVSSSGFNPQ PVEGEKKCLN SELWHACAGP LVSLPHVGSR VVYFPQGHSE QVAASTNKEI  60
DGHIPNYPGL PPQLICHLHN VTMDADVETD EVYAQMTLQP LSPEEQKDVC LLPAELGTLS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPVQELIGK DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNDNNQ LLLGIRRANR PQAVLPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFFNPR ACPSEFVIPL GKYVKAVYHT RVSVGMRFRM  300
LFETEESSIR RYMGTITGIG DLDPVRWPNS HWQSVKNFIV NPLNMQVGWD ESTAGERQPR  360
VSLWEIEPLT TFPMYPSPFS LRLKRPWPPG LPSFPVGVGG GGVACIHYFD SVLILAVHDL  420
LICSGLSNGD MTMNSPLPWL HGGMGDQGIQ SFNFQGFGVT PFMQPRFDAS MLGLQPDILQ  480
AMATLDSSKL ANQSLMQFQH IPSGSASLIQ NQLLHPSNLQ NTFLQGFPEN QLISQTQMLQ  540
QQLQGHQSYN TQQLQLQRQQ LYQDQQLQEP HQVHSLRQDQ QQTKVLGSTG SQQTYSDIVG  600
NHINTSNNCS TMQSLLNSFS RNGASTFLNM PETNSLVSPS SSSKRIALES QLPSRVPHRV  660
TQAEDLMVPN TKVSDFSTLF SPIPGKEVLD YQAVADSQNN ALFGVNGMSN LKGNSSENGS  720
VPVPYATSTF TNTVGSEYPV NSDMTTSSCV DESGVLQSSE NVDQANSLTE TFVKVSVLSP  780
VRNMVHKSRS FGRSLDISKF SSYNELRSEL ARLFGLEGLL EDPERSGWQL VFVDRENDVL  840
LLGDDPWHEF VNSVWYIKIL SPLEVQQMGK EGIDLPSAGK TQRIASNGNG CDDFMNRNHS  900
CNIVNGIPLG SLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1561536747388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5946840.0HM594684.1 Solanum lycopersicum auxin response factor 6 (ARF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351990.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLM1CTA20.0M1CTA2_SOLTU; Auxin response factor
STRINGPGSC0003DMT4000741690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]