PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00196.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 989aa MW: 109901 Da PI: 7.0368 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.4 | 1.7e-29 | 604 | 660 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK vkg+ef+rsYY+Ct+++C kk+vers+ d+++++i+Y g+H+h+ Sme2.5_00196.1_g00004.1 604 EDGYNWRKYGQKLVKGNEFTRSYYKCTYPSCLGKKQVERSH-DGHITDIHYIGKHEHP 660 7****************************************.***************8 PP | |||||||
2 | WRKY | 97.6 | 8e-31 | 782 | 839 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg +WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H h+ Sme2.5_00196.1_g00004.1 782 NDGQRWRKYGQKIVKGNPNPRSYYRCSVAGCPVKKHVERASHDPKLVITTYEGHHVHD 839 8*******************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00265 | 1.2E-51 | 33 | 210 | IPR001267 | Thymidine kinase |
SuperFamily | SSF52540 | 3.6E-37 | 33 | 171 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SuperFamily | SSF57716 | 8.08E-10 | 171 | 213 | No hit | No description |
Gene3D | G3DSA:3.30.60.20 | 1.6E-16 | 171 | 212 | No hit | No description |
Gene3D | G3DSA:2.60.120.200 | 1.8E-4 | 219 | 342 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
PROSITE profile | PS50811 | 21.184 | 598 | 662 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.9E-25 | 599 | 660 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.24E-23 | 600 | 660 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-31 | 603 | 661 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-21 | 604 | 660 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.4E-33 | 767 | 841 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-27 | 773 | 841 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.544 | 776 | 841 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-36 | 781 | 840 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-24 | 782 | 838 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006302 | Biological Process | double-strand break repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010225 | Biological Process | response to UV-C | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004797 | Molecular Function | thymidine kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 989 aa Download sequence Send to blast |
MIFAMSFSSS SLKNSVFVPN GSDQRGHNHH PPGEIHVIFG PMFAGKTTAL LRWVNSESKL 60 GRNVVMIKSN KDTRYAVDAV VTHDGTKFPC WSLPDLSSFK HRFGPDAYEK VDVIGIDEAQ 120 FFDDLYDFCC NAADIDGKIV IVAGLDGDYL RRKFGSVLDI IPIADTVMKL TARCELCGKR 180 AFFTLRKTDE MQKELIGGAN MYMPVCRQHY VHGKSIVEST KKVLESHQVA GCRLGNEDLS 240 GNVRGFHTCE RPFSMVKKHS MAKGRKLILI NVLPTMGALV LLCAFMSVLL MCDQRRKVKT 300 NVLLDFEYEA CVLDFGMAKL LKPDLSNFTV SYKRNQLWGR GNRKLERGIQ GEESNTPTRA 360 LELFVLHVQI DPNSTTVALL NYSFYSPANY LFENVQHDDW NMILIMGTPK EEATDEVLAE 420 NLEQEPDLDP AISKSELKET KSFESISVDV VSGELQKRLS QCDKGINESQ SNQEATSLPR 480 EQENQSEKAQ NLQGLKSEAD TSGSSQLSSL PKDSDAKSGG SESSVKGKVV SVLSGKPSDS 540 SDQMQTSNME IVVSKSDQQR VSCHIKREKA LDKLQPRRNP DASVHGLTSD QGTTLFRAPE 600 KPSEDGYNWR KYGQKLVKGN EFTRSYYKCT YPSCLGKKQV ERSHDGHITD IHYIGKHEHP 660 ETPSVPQMSP ELVLPLQMKQ PDVPIITALE AEGEKSTMPR ETCEPSKPSE APLALDIVPA 720 CGDVKVTPLK RHKLENEVDK DDAPDSKRQK KDTVPTDDTP PIKSHSEPRH IVQTVSEVDI 780 INDGQRWRKY GQKIVKGNPN PRSYYRCSVA GCPVKKHVER ASHDPKLVIT TYEGHHVHDF 840 PTSRAISQIS AAPDSGTTNV REDSRIESGE NKHVRESKTE AAENKHVGES KSESGESKHI 900 GESKTEAGEN KHVKESRVKS AENKHVEDSR VKSAENKHVG ESRNESGGNK HVEESKPESV 960 GNKHVGESIP ESGENKHVGL DMAVHIGAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4uxh_A | 6e-41 | 33 | 210 | 5 | 178 | THYMIDINE KINASE |
4uxh_B | 6e-41 | 33 | 210 | 5 | 178 | THYMIDINE KINASE |
4uxi_A | 6e-41 | 33 | 210 | 5 | 178 | THYMIDINE KINASE |
4uxi_B | 6e-41 | 33 | 210 | 5 | 178 | THYMIDINE KINASE |
4uxj_A | 6e-41 | 33 | 210 | 12 | 185 | THYMIDINE KINASE |
4uxj_B | 6e-41 | 33 | 210 | 12 | 185 | THYMIDINE KINASE |
4uxj_C | 6e-41 | 33 | 210 | 12 | 185 | THYMIDINE KINASE |
4uxj_D | 6e-41 | 33 | 210 | 12 | 185 | THYMIDINE KINASE |
4uxj_E | 6e-41 | 33 | 210 | 12 | 185 | THYMIDINE KINASE |
4uxj_F | 6e-41 | 33 | 210 | 12 | 185 | THYMIDINE KINASE |
4uxj_G | 6e-41 | 33 | 210 | 12 | 185 | THYMIDINE KINASE |
4uxj_H | 6e-41 | 33 | 210 | 12 | 185 | THYMIDINE KINASE |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF313452 | 0.0 | AF313452.1 Solanum dulcamara thermal hysteresis protein STHP-64 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769339.1 | 0.0 | WRKY transcription factor 1-like isoform X1 | ||||
TrEMBL | Q947G7 | 0.0 | Q947G7_SOLDU; Thermal hysteresis protein STHP-64 | ||||
STRING | PGSC0003DMT400074158 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4558 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 4e-66 | WRKY family protein |