PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00196.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 989aa    MW: 109901 Da    PI: 7.0368
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00196.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29604660259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +DgynWrKYGqK vkg+ef+rsYY+Ct+++C  kk+vers+ d+++++i+Y g+H+h+
  Sme2.5_00196.1_g00004.1 604 EDGYNWRKYGQKLVKGNEFTRSYYKCTYPSCLGKKQVERSH-DGHITDIHYIGKHEHP 660
                              7****************************************.***************8 PP

2WRKY97.68e-31782839259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dg +WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H h+
  Sme2.5_00196.1_g00004.1 782 NDGQRWRKYGQKIVKGNPNPRSYYRCSVAGCPVKKHVERASHDPKLVITTYEGHHVHD 839
                              8*******************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002651.2E-5133210IPR001267Thymidine kinase
SuperFamilySSF525403.6E-3733171IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF577168.08E-10171213No hitNo description
Gene3DG3DSA:3.30.60.201.6E-16171212No hitNo description
Gene3DG3DSA:2.60.120.2001.8E-4219342IPR013320Concanavalin A-like lectin/glucanase domain
PROSITE profilePS5081121.184598662IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-25599660IPR003657WRKY domain
SuperFamilySSF1182908.24E-23600660IPR003657WRKY domain
SMARTSM007743.9E-31603661IPR003657WRKY domain
PfamPF031061.0E-21604660IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-33767841IPR003657WRKY domain
SuperFamilySSF1182901.05E-27773841IPR003657WRKY domain
PROSITE profilePS5081134.544776841IPR003657WRKY domain
SMARTSM007747.7E-36781840IPR003657WRKY domain
PfamPF031062.1E-24782838IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010225Biological Processresponse to UV-C
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004797Molecular Functionthymidine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MIFAMSFSSS SLKNSVFVPN GSDQRGHNHH PPGEIHVIFG PMFAGKTTAL LRWVNSESKL  60
GRNVVMIKSN KDTRYAVDAV VTHDGTKFPC WSLPDLSSFK HRFGPDAYEK VDVIGIDEAQ  120
FFDDLYDFCC NAADIDGKIV IVAGLDGDYL RRKFGSVLDI IPIADTVMKL TARCELCGKR  180
AFFTLRKTDE MQKELIGGAN MYMPVCRQHY VHGKSIVEST KKVLESHQVA GCRLGNEDLS  240
GNVRGFHTCE RPFSMVKKHS MAKGRKLILI NVLPTMGALV LLCAFMSVLL MCDQRRKVKT  300
NVLLDFEYEA CVLDFGMAKL LKPDLSNFTV SYKRNQLWGR GNRKLERGIQ GEESNTPTRA  360
LELFVLHVQI DPNSTTVALL NYSFYSPANY LFENVQHDDW NMILIMGTPK EEATDEVLAE  420
NLEQEPDLDP AISKSELKET KSFESISVDV VSGELQKRLS QCDKGINESQ SNQEATSLPR  480
EQENQSEKAQ NLQGLKSEAD TSGSSQLSSL PKDSDAKSGG SESSVKGKVV SVLSGKPSDS  540
SDQMQTSNME IVVSKSDQQR VSCHIKREKA LDKLQPRRNP DASVHGLTSD QGTTLFRAPE  600
KPSEDGYNWR KYGQKLVKGN EFTRSYYKCT YPSCLGKKQV ERSHDGHITD IHYIGKHEHP  660
ETPSVPQMSP ELVLPLQMKQ PDVPIITALE AEGEKSTMPR ETCEPSKPSE APLALDIVPA  720
CGDVKVTPLK RHKLENEVDK DDAPDSKRQK KDTVPTDDTP PIKSHSEPRH IVQTVSEVDI  780
INDGQRWRKY GQKIVKGNPN PRSYYRCSVA GCPVKKHVER ASHDPKLVIT TYEGHHVHDF  840
PTSRAISQIS AAPDSGTTNV REDSRIESGE NKHVRESKTE AAENKHVGES KSESGESKHI  900
GESKTEAGEN KHVKESRVKS AENKHVEDSR VKSAENKHVG ESRNESGGNK HVEESKPESV  960
GNKHVGESIP ESGENKHVGL DMAVHIGAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4uxh_A6e-41332105178THYMIDINE KINASE
4uxh_B6e-41332105178THYMIDINE KINASE
4uxi_A6e-41332105178THYMIDINE KINASE
4uxi_B6e-41332105178THYMIDINE KINASE
4uxj_A6e-413321012185THYMIDINE KINASE
4uxj_B6e-413321012185THYMIDINE KINASE
4uxj_C6e-413321012185THYMIDINE KINASE
4uxj_D6e-413321012185THYMIDINE KINASE
4uxj_E6e-413321012185THYMIDINE KINASE
4uxj_F6e-413321012185THYMIDINE KINASE
4uxj_G6e-413321012185THYMIDINE KINASE
4uxj_H6e-413321012185THYMIDINE KINASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3134520.0AF313452.1 Solanum dulcamara thermal hysteresis protein STHP-64 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769339.10.0WRKY transcription factor 1-like isoform X1
TrEMBLQ947G70.0Q947G7_SOLDU; Thermal hysteresis protein STHP-64
STRINGPGSC0003DMT4000741580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.14e-66WRKY family protein