 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_00193.1_g00016.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
TCP |
| Protein Properties |
Length: 348aa MW: 39255.2 Da PI: 7.5 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00193.1_g00016.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 95.3 | 1.2e-29 | 54 | 172 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaessss 80
g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ k+ i+ l+ + +++ ++ e+ s++
Sme2.5_00193.1_g00016.1 54 FGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEATKHDIDNLPPLAVPPEYFTrfqqsprEEYSDVH 139
689*************************************************************7777744433221111111111 PP
TCP 81 sasnsssg............................k 89
+ + +
Sme2.5_00193.1_g00016.1 140 DLQ----QlrsqwinanqpyfgvddslrgkskvsidH 172
111....122234444444555554444443333331 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MNSSENSSQT KQESGGRGTN NGSRLTSKTT STPSSSRQWG AFKNPRIVRV SRAFGGKDRH 60
SKVCTIRGLR DRRIRLSVPT AIQLYDLQDR LGLSQPSKVV DWLLEATKHD IDNLPPLAVP 120
PEYFTRFQQS PREEYSDVHD LQQLRSQWIN ANQPYFGVDD SLRGKSKVSI DHAESWKNKS 180
IASNQEPNRE DNMFPLGNIR SPNLLGMPFS SYHQWEPNSN LSLGHFGHNA FSSQIDESSH 240
RNGNFPLSLG SSSSPFPSSS QLHYNPVATT FQPIVPSPYM TNYPIESHHD PRAHMNHFNF 300
LTSTTSPNNP LVMPTLNLIS SSQPRWINSR DDDDDYDDDG QLFEGRAN
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC238446 | 9e-90 | AC238446.1 Solanum lycopersicum chromosome 3 clone C03HBa0051C24, complete sequence. |
| GenBank | AC238469 | 9e-90 | AC238469.1 Solanum lycopersicum chromosome 3 clone C03HBa0291G05, complete sequence. |
| GenBank | EU124739 | 9e-90 | EU124739.1 Solanum lycopersicum chromosome 3 clone C03HBa0233O20, complete sequence. |
| GenBank | HG975515 | 9e-90 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G60970.1 | 3e-45 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
