PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00193.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 348aa MW: 39255.2 Da PI: 7.5 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 95.3 | 1.2e-29 | 54 | 172 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaessss 80 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ k+ i+ l+ + +++ ++ e+ s++ Sme2.5_00193.1_g00016.1 54 FGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEATKHDIDNLPPLAVPPEYFTrfqqsprEEYSDVH 139 689*************************************************************7777744433221111111111 PP TCP 81 sasnsssg............................k 89 + + + Sme2.5_00193.1_g00016.1 140 DLQ----QlrsqwinanqpyfgvddslrgkskvsidH 172 111....122234444444555554444443333331 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-27 | 56 | 163 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.867 | 56 | 114 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MNSSENSSQT KQESGGRGTN NGSRLTSKTT STPSSSRQWG AFKNPRIVRV SRAFGGKDRH 60 SKVCTIRGLR DRRIRLSVPT AIQLYDLQDR LGLSQPSKVV DWLLEATKHD IDNLPPLAVP 120 PEYFTRFQQS PREEYSDVHD LQQLRSQWIN ANQPYFGVDD SLRGKSKVSI DHAESWKNKS 180 IASNQEPNRE DNMFPLGNIR SPNLLGMPFS SYHQWEPNSN LSLGHFGHNA FSSQIDESSH 240 RNGNFPLSLG SSSSPFPSSS QLHYNPVATT FQPIVPSPYM TNYPIESHHD PRAHMNHFNF 300 LTSTTSPNNP LVMPTLNLIS SSQPRWINSR DDDDDYDDDG QLFEGRAN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-17 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-17 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00008 | PBM | Transfer from 496250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC238446 | 9e-90 | AC238446.1 Solanum lycopersicum chromosome 3 clone C03HBa0051C24, complete sequence. | |||
GenBank | AC238469 | 9e-90 | AC238469.1 Solanum lycopersicum chromosome 3 clone C03HBa0291G05, complete sequence. | |||
GenBank | EU124739 | 9e-90 | EU124739.1 Solanum lycopersicum chromosome 3 clone C03HBa0233O20, complete sequence. | |||
GenBank | HG975515 | 9e-90 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234564.2 | 1e-135 | TCP transcription factor 4 | ||||
TrEMBL | G3BGU4 | 1e-132 | G3BGU4_SOLLC; TCP transcription factor 4 | ||||
STRING | Solyc03g115010.1.1 | 1e-134 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60970.1 | 3e-45 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |