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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00192.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 331aa MW: 37650.8 Da PI: 5.4194 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.6 | 1.3e-14 | 129 | 180 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+++N+ ++ Lr+l+P++ ++ + a+i+ A++Y+k+L+ Sme2.5_00192.1_g00002.1 129 QRITHIAVERNRRKQMNDYLSILRSLMPQS---FVQRGDQASIVSGAINYVKELE 180 799**************************9...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.23E-14 | 127 | 184 | No hit | No description |
SuperFamily | SSF47459 | 7.33E-17 | 128 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.491 | 128 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-14 | 128 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.1E-12 | 129 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.9E-12 | 134 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MALEAITQQQ QYLYALLGTT NWGSGSGSDY YNNEAFDGFL ANNQNASAPQ EYEDYSNWNL 60 PPPLLVDSQN EYHQWCQNSS SVLDHNFAIP NGQEQQPHLD SPAEMSSSTT RPRRRRTRTK 120 KNNEEIENQR ITHIAVERNR RKQMNDYLSI LRSLMPQSFV QRGDQASIVS GAINYVKELE 180 QQLQFLCGQK HLNSQNQESN GETSPFSEFF SIPQYSTTMS AAATTSENGA CENEYYRNQK 240 LPATADIEVT MVENHANLKI RSKRRPRLLP RIISGLESLR LNVLHLNVST VDQFVLCSLS 300 LKVEEDCKMS SVEEIAAVVN QILIRIHEEA N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 117 | RPRRRRTR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361869.1 | 0.0 | PREDICTED: transcription factor bHLH94-like | ||||
TrEMBL | M1CS96 | 0.0 | M1CS96_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400073574 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13227 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 2e-70 | bHLH family protein |