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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00186.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 48861.2 Da PI: 6.0565 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.2 | 2.9e-13 | 73 | 125 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iN ++ Lr+llP + ++ kKls +++ + +YI +Lq Sme2.5_00186.1_g00004.1 73 KKLNHNASERDRRKKINGLYSSLRSLLPAS--EHTKKLSIPSTVSRMLKYIPELQ 125 6789*************************7..37777***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.719 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-15 | 72 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-13 | 73 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.93E-12 | 73 | 129 | No hit | No description |
SMART | SM00353 | 1.3E-8 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.60.15.10 | 5.4E-15 | 227 | 302 | IPR001279 | Metallo-beta-lactamase |
Gene3D | G3DSA:3.60.15.10 | 7.4E-5 | 324 | 406 | IPR001279 | Metallo-beta-lactamase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MLAISSYSSP SNNFGWLLED VISHELTNSG ENSNPDIAIN SLSQKSLQHC DSNKFDQINI 60 NGGDHCQPDQ TVKKLNHNAS ERDRRKKING LYSSLRSLLP ASEHTKKLSI PSTVSRMLKY 120 IPELQSEVER LTQKKEQLTS TTIYNRENSA DFNKQKGRKG GIENSSLVIS TSGLGDNEIA 180 IQISTLKNNK GSIGEVISIL EDEGLDLLNA TSFETFEDRI FYTLHFQGLQ RFCMEHKIKL 240 SQVDHICLTR VCSETTGGLP GLLLTLAGMK DDSPGSPSVI HIWGPPNLDL LVNAMKTYVP 300 HGVMKNKNII SQSGSALAPE LRADGKFKAV HPDDVIGPPI PGPIVLIVDC PTEPHAQELL 360 SAQALEAYYS DSESNSTNVV NCIIHLSPST VVNSPVYGRW MRKFDILWKE LQAPSFPSVQ 420 NEDDGVVAPN IKESVEVCLL SSRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-114 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016544540.1 | 1e-117 | PREDICTED: transcription factor ORG2-like | ||||
TrEMBL | A0A1U8EMF2 | 1e-116 | A0A1U8EMF2_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2VWC0 | 1e-116 | A0A2G2VWC0_CAPBA; Uncharacterized protein | ||||
TrEMBL | A0A2G2YNX3 | 1e-116 | A0A2G2YNX3_CAPAN; transcription factor ORG2-like | ||||
STRING | Solyc10g079650.1.1 | 1e-105 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-41 | bHLH family protein |