PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 977aa MW: 111337 Da PI: 5.0069

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00172.1_g00029.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.1	2.8e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeelv +yLk+k+++kk+el ++i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk gyWk Sme2.5_00172.1_g00029.1 6 LPPGFRFHPTDEELVAYYLKRKINAKKIEL-DIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKGGYWK 90 79**************************.99***********6434555777************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd++v s ++++vg+kktLv+y+grap+g +tdWvmheyrl Sme2.5_00172.1_g00029.1 91 ATGKDRKVNS-QSRAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 ******.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-63	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.331	6	156	IPR003441	NAC domain
Pfam	PF02365	1.4E-29	7	133	IPR003441	NAC domain
SuperFamily	SSF53807	4.71E-9	742	934	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKINA KKIELDIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRKVNS QSRAVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECEV ANGLQDAYAL CRVIKKSLNI NGSKIGEQQY YGSGATSDRS 180 SSIDHVYSHE RGTSCHDMME SSHGLMPSSS SSTSMALHGN SPVNNNVSAP SDEDNDDKWM 240 QYLSNEPSFA FNNTLQPIPN YGTLPFPPSK VDIALECARL QHRFTLPPLE IQDFAQVGYV 300 DQARIPAQSS FIHQASQNHL INQDSWGGNN SSCAPIDDDF SFLIPPNNNQ FHHDLDSLNF 360 MEQDDNVIRS IDVGDFDHED FKSDRMVENL RWIGMSNRDL EKTFLEDYKT VPLENVSTVQ 420 REEHELQGEN SGQTNSFNET EANNFSIGFD NLLDNDDVFS NSPSFEVYEK VEVNHGFFIA 480 TRQASKTFYH QLTPSRTLKI HRNLVPVLHD FPKNTTSLEN FVTSPWTTTM RTLGGIVAIL 540 QTFWIYFGEY LEWEAKGFKL EDKKGVYEEY CLMERVEKKI KKVQDFKWDF YKQNKFPIGD 600 RKEGKWPNYL TLVVALSSSL EYANAATPTV KVGNISKVTD SAYFRIYYGQ TFKVIKNTLD 660 GKSYLLIQLL GLLGNLKGIT STYVASQCVL KLYQDGQIEN VNKNDPQQLA QYAAHFIANT 720 DEAQPCNFAT FVPVGEDAPL QVTIPTYYEQ LSFTLSRAEW IKYLGVFANM ENRANQVYDA 780 IKENYLCLSK AATSRISFKP TVSWMEYKDG VWSFTREPYK LKFVEDAGGA NIDDSINKVT 840 YNMSIPDDLE ELHAILCTVD VVIDETYTSD PEVYNGSTFL GNINLADQTC FAFLTNQSIW 900 RYDKRVQNYT VLDWYDGAVS QPQLLLADII EALYPSGNYN TTYFRNIAKG EGIISIVPEM 960 CERDSSIPME PTVVPCQ

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKINA KKIELDIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRKVNS QSRAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECEV ANGLQDAYAL CRVIKKSLNI NGSKIGEQQY YGSGATSDRS  180
SSIDHVYSHE RGTSCHDMME SSHGLMPSSS SSTSMALHGN SPVNNNVSAP SDEDNDDKWM  240
QYLSNEPSFA FNNTLQPIPN YGTLPFPPSK VDIALECARL QHRFTLPPLE IQDFAQVGYV  300
DQARIPAQSS FIHQASQNHL INQDSWGGNN SSCAPIDDDF SFLIPPNNNQ FHHDLDSLNF  360
MEQDDNVIRS IDVGDFDHED FKSDRMVENL RWIGMSNRDL EKTFLEDYKT VPLENVSTVQ  420
REEHELQGEN SGQTNSFNET EANNFSIGFD NLLDNDDVFS NSPSFEVYEK VEVNHGFFIA  480
TRQASKTFYH QLTPSRTLKI HRNLVPVLHD FPKNTTSLEN FVTSPWTTTM RTLGGIVAIL  540
QTFWIYFGEY LEWEAKGFKL EDKKGVYEEY CLMERVEKKI KKVQDFKWDF YKQNKFPIGD  600
RKEGKWPNYL TLVVALSSSL EYANAATPTV KVGNISKVTD SAYFRIYYGQ TFKVIKNTLD  660
GKSYLLIQLL GLLGNLKGIT STYVASQCVL KLYQDGQIEN VNKNDPQQLA QYAAHFIANT  720
DEAQPCNFAT FVPVGEDAPL QVTIPTYYEQ LSFTLSRAEW IKYLGVFANM ENRANQVYDA  780
IKENYLCLSK AATSRISFKP TVSWMEYKDG VWSFTREPYK LKFVEDAGGA NIDDSINKVT  840
YNMSIPDDLE ELHAILCTVD VVIDETYTSD PEVYNGSTFL GNINLADQTC FAFLTNQSIW  900
RYDKRVQNYT VLDWYDGAVS QPQLLLADII EALYPSGNYN TTYFRNIAKG EGIISIVPEM  960
CERDSSIPME PTVVPCQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-53	2	133	11	140	Stress-induced transcription factor NAC1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-168	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006348211.1	0.0	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	A0A3Q7F664	0.0	A0A3Q7F664_SOLLC; Uncharacterized protein
STRING	Solyc02g081270.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1495	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-144	NAC domain containing protein 28