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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_00170.1_g00011.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
C3H |
Protein Properties |
Length: 185aa MW: 20573 Da PI: 9.0653 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00170.1_g00011.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 22.1 | 2.6e-07 | 18 | 39 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25
++C f+r G C++G++C++ H
Sme2.5_00170.1_g00011.1 18 PICLQFQRWGNCRFGEKCRYVH 39
79******************** PP
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2 | zf-CCCH | 45.4 | 1.3e-14 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC ++ r G C+yG+rC+FaHg+
Sme2.5_00170.1_g00011.1 101 KTRLCIRWERDGSCPYGSRCQFAHGK 126
9***********************96 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 0.058 | 14 | 41 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.07 | 14 | 42 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-5 | 15 | 41 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-5 | 18 | 39 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-5 | 19 | 40 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-9 | 98 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-7 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-14 | 99 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-12 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 185 aa
Download sequence Send
to blast |
MAQEGNRFNV GRTLVHQPIC LQFQRWGNCR FGEKCRYVHT TGGSTYGPPQ GVGCDQRYLQ 60 GGKGRETAAI TIGTAGNEVK DKSYSDNVER KMSVDFRRNL KTRLCIRWER DGSCPYGSRC 120 QFAHGKGEMQ VVGYSNPPVS LSSAGIPAPA ENVASDETGS SAPSKLRFKW NDVQRISQIY 180 ADWIE
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