PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00170.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 185aa MW: 20573 Da PI: 9.0653 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.1 | 2.6e-07 | 18 | 39 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C f+r G C++G++C++ H Sme2.5_00170.1_g00011.1 18 PICLQFQRWGNCRFGEKCRYVH 39 79******************** PP | |||||||
2 | zf-CCCH | 45.4 | 1.3e-14 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC ++ r G C+yG+rC+FaHg+ Sme2.5_00170.1_g00011.1 101 KTRLCIRWERDGSCPYGSRCQFAHGK 126 9***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.058 | 14 | 41 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.07 | 14 | 42 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-5 | 15 | 41 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-5 | 18 | 39 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-5 | 19 | 40 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-9 | 98 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-7 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-14 | 99 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-12 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MAQEGNRFNV GRTLVHQPIC LQFQRWGNCR FGEKCRYVHT TGGSTYGPPQ GVGCDQRYLQ 60 GGKGRETAAI TIGTAGNEVK DKSYSDNVER KMSVDFRRNL KTRLCIRWER DGSCPYGSRC 120 QFAHGKGEMQ VVGYSNPPVS LSSAGIPAPA ENVASDETGS SAPSKLRFKW NDVQRISQIY 180 ADWIE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019068280.1 | 6e-83 | zinc finger CCCH domain-containing protein 12-like isoform X1 | ||||
Refseq | XP_025885921.1 | 4e-83 | zinc finger CCCH domain-containing protein 12-like isoform X2 | ||||
TrEMBL | A0A3Q7FUD9 | 3e-82 | A0A3Q7FUD9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g116410.1.1 | 1e-82 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13026 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-16 | C3H family protein |