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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_00170.1_g00010.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
C3H |
Protein Properties |
Length: 259aa MW: 28434.6 Da PI: 8.4876 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00170.1_g00010.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 20.8 | 6.7e-07 | 46 | 68 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+++C f+r G+C++G++C+++H
Sme2.5_00170.1_g00010.1 46 ESICIPFRRCGICSFGEKCPYIH 68
578******************** PP
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2 | zf-CCCH | 20.5 | 8.3e-07 | 136 | 149 | 13 | 26 |
S--TTTTT-SS-SS CS
zf-CCCH 13 GtCkyGdrCkFaHg 26
GtC yG++C+FaHg
Sme2.5_00170.1_g00010.1 136 GTCVYGEKCTFAHG 149
9************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MSTPEKVSDT RDESNSNAEC ESLKKQNSRM AGERNMSNVP SVHVDESICI PFRRCGICSF 60 GEKCPYIHAR GKGENRESSA RTILDGESTD VPSRGIGFEE SSGSSAIKIE TRKPKKPAHF 120 LTKIKTKLFT LRGSDGTCVY GEKCTFAHGI AELRSLDSPN PPELQRSADI SAPARNVPAR 180 KDSSNPPESQ RSADISAPAR NVPTRKDSSN PPESQRSADI SAPDRNVPAS ETVTIAPADR 240 WFKLNDLKRN SRIYGDWIE
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