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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00170.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 259aa MW: 28434.6 Da PI: 8.4876 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 6.7e-07 | 46 | 68 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C f+r G+C++G++C+++H Sme2.5_00170.1_g00010.1 46 ESICIPFRRCGICSFGEKCPYIH 68 578******************** PP | |||||||
2 | zf-CCCH | 20.5 | 8.3e-07 | 136 | 149 | 13 | 26 |
S--TTTTT-SS-SS CS zf-CCCH 13 GtCkyGdrCkFaHg 26 GtC yG++C+FaHg Sme2.5_00170.1_g00010.1 136 GTCVYGEKCTFAHG 149 9************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.75E-5 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.59 | 45 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-5 | 46 | 68 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-4 | 48 | 70 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.488 | 48 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 123 | 154 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1 | 125 | 150 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-8 | 127 | 155 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.671 | 127 | 151 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSTPEKVSDT RDESNSNAEC ESLKKQNSRM AGERNMSNVP SVHVDESICI PFRRCGICSF 60 GEKCPYIHAR GKGENRESSA RTILDGESTD VPSRGIGFEE SSGSSAIKIE TRKPKKPAHF 120 LTKIKTKLFT LRGSDGTCVY GEKCTFAHGI AELRSLDSPN PPELQRSADI SAPARNVPAR 180 KDSSNPPESQ RSADISAPAR NVPTRKDSSN PPESQRSADI SAPDRNVPAS ETVTIAPADR 240 WFKLNDLKRN SRIYGDWIE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13026 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 4e-07 | C3H family protein |