PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00165.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 422aa MW: 47333.4 Da PI: 7.6984 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.7e-09 | 134 | 154 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C++Gd+C FaHg Sme2.5_00165.1_g00012.1 134 VCSEFRK-GNCSRGDNCEFAHG 154 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.59E-5 | 128 | 158 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-6 | 129 | 155 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.45 | 130 | 156 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 133 | 156 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.3E-7 | 134 | 154 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9 | 164 | 187 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MMEGLCAELN HHHKFHPSHQ LYKKSLRDID IPPRKLLSRR SSLVDYTVSD GQLMDSPKLG 60 VESDGNFQKF LPYNSMDDDE DADPYSSDHF RMYEFKVRRC TRSRSHDWTD CPFAHPGEKA 120 RRRDPRRFHY SGTVCSEFRK GNCSRGDNCE FAHGVFECWL HPTRYRTEAC KDGKNCKRKV 180 CFFAHTSRQL RVLPPGCYEN GSSPKNLNSS PSEKKYRNLN HCVFCHSVSA SPTSTLIGMS 240 HISPPISPSF SPPLSPSNRN QFSSPVSRYI DRFGSVESAS SGMGQLDPSG LMSYKDALTE 300 LVSSLEAMNV NHEPNSSAAG GAASYSVNYD GNLPWLDVNF NNNNSYDDQQ QFILSPSTPS 360 PSPISNSRTK FYTREFPSPT PVSASRLSFV EEPNNNNAGN RFYSDNGLGG GPDLGWVNDL 420 LT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081171.1 | 0.0 | zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | M1D6B1 | 0.0 | M1D6B1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400082814 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10595 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 3e-75 | C3H family protein |