PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00162.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 487aa    MW: 55533.5 Da    PI: 6.438
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00162.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.34.9e-24114223186
                 trihelix   1 rWtkqevlaLiearremeerlrrgk.......................lkkplWeevskkmrergferspkqCkekwenlnkrykk 63 
                              +Wt+++v++Li ++ +++++++++                        +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+
  Sme2.5_00162.1_g00005.1 114 KWTDNMVRLLILMVYYVGDEVGSEGnnnmdpsgkkksgsgggggvgvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKR 199
                              7**************999999864336778888899999*********************************************** PP

                 trihelix  64 ikegekkr.tsessstcpyfdqle 86 
                              ++++ +k+ +++++++ +++d ++
  Sme2.5_00162.1_g00005.1 200 VNDILGKGtSCRVVENQKLLDTMD 223
                              ********669**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-20112249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDSGSLYSNM GPGMLGLEMS LHHQIPQQNT QHHMQQPQPP PHHSIVSYAH QENVDNQQQA  60
LRQVFPFGNN KAKNQSLNFS DDDEPVPGVS ADNNSTDDGK RNSSNKTCPW QRMKWTDNMV  120
RLLILMVYYV GDEVGSEGNN NMDPSGKKKS GSGGGGGVGV LQKKGKWKSV SRAMMERGFY  180
VSPQQCEDKF NDLNKRYKRV NDILGKGTSC RVVENQKLLD TMDHLSPKMK EEVKKLLNSK  240
HLFFREMCAY HNSCGHNGAS GSGVANGQAH QNQLELQQQQ RCLHSSENVN ARIGASLVEG  300
SKMSKGASGE NEVEDEDDEE DEDEDEEDED DELSGARGHD HDHDHPQSHD EDDDLDERSR  360
KRQRKLGTSS PMVQHFCTEL ANVVQDRGRS LVDKRQWMKT KMMQLEEQQV SCLSQAFELQ  420
KQRLKWKKFV SKKEREMERE KLINERKKLE NERMVLLLKQ KELELLDYHQ HHPNNNNRNS  480
DPSSVTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161543.10.0PREDICTED: nucleomorphin
TrEMBLA0A0V0IKG10.0A0A0V0IKG1_SOLCH; Putative nucleomorphin-like
STRINGXP_009788508.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-68sequence-specific DNA binding transcription factors