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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sme2.5_00162.1_g00003.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
Trihelix |
Protein Properties |
Length: 529aa MW: 57767.5 Da PI: 6.745 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00162.1_g00003.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 56.2 | 9e-18 | 142 | 228 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
+W++ + +L+ea+ e+ +l+rg+l++ +Weev++ + r ++ ++s +qCk+k +nl+kryk ++++++ + + s++p+f+q
Sme2.5_00162.1_g00003.1 142 EWSDTAIACLLEAYMEKFVQLNRGNLRGRDWEEVAAMVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSTG-GITISHWPWFKQ 226
5*************************************767778899************************99.66777******* PP
trihelix 85 le 86
+e
Sme2.5_00162.1_g00003.1 227 ME 228
*8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 529 aa
Download sequence Send
to blast |
MASCDDDFSL LGDDNAAAAP TTANPTYHHQ PFSTHRFKPV QIHPPPIPAG SPKNISGDDD 60 EGEGYSDNNT QSYHIGVNHY DNDSNPFEND TDVDRSRVNS SNDKRTDRED ISDNGTPYNY 120 KRSKIGSSSG GGSGEYRKDR EEWSDTAIAC LLEAYMEKFV QLNRGNLRGR DWEEVAAMVS 180 ERCEKQSKSV EQCKNKVDNL KKRYKLERHR MSTGGITISH WPWFKQMEQI VGNSVSVKAT 240 SEEDKAIVAV INSSTGRQSK RYGTAVPSPS GQIVKSKSSV GPRWRRVVLK ISGAALAGTT 300 PNTNDPNNID PKVATLVATE VSIACRLGIE VAIVVGGRNF FCGDTWVTST GLDRCTAYQI 360 GMMATVMNSI LLQSALEKVG VQTRVQSAFS MPEHTEPYSR QRAMRHLEKG RVVIFGGIGA 420 GTGNPLFSTD TAAALRASEI HADALLKATN VDGVYACDSR NNNVVAEHVS FRELVSGGDS 480 PLDLMAVTLC EENAIPIVIF NLHGPGNISR ALCGEQTDKE IHRAALRLQ
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3ek5_A | 1e-54 | 284 | 516 | 9 | 234 | Uridylate kinase |
3ek5_B | 1e-54 | 284 | 516 | 9 | 234 | Uridylate kinase |
3ek5_C | 1e-54 | 284 | 516 | 9 | 234 | Uridylate kinase |
3ek5_D | 1e-54 | 284 | 516 | 9 | 234 | Uridylate kinase |
3ek5_E | 1e-54 | 284 | 516 | 9 | 234 | Uridylate kinase |
3ek5_F | 1e-54 | 284 | 516 | 9 | 234 | Uridylate kinase |
3ek6_A | 1e-54 | 284 | 516 | 9 | 234 | Uridylate kinase |
3ek6_B | 1e-54 | 284 | 516 | 9 | 234 | Uridylate kinase |
3ek6_C | 1e-54 | 284 | 516 | 9 | 234 | Uridylate kinase |
3ek6_D | 1e-54 | 284 | 516 | 9 | 234 | Uridylate kinase |
3ek6_E | 1e-54 | 284 | 516 | 9 | 234 | Uridylate kinase |
3ek6_F | 1e-54 | 284 | 516 | 9 | 234 | Uridylate kinase |
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