PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00136.1_g00025.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 331aa    MW: 37497 Da    PI: 7.2369
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00136.1_g00025.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.73e-23953145
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             kr+e +snrqvt++kRr gilKKA+E+SvLCd+++ +++fs+tgk
  Sme2.5_00136.1_g00025.1  9 KRVEKSSNRQVTYCKRRSGILKKAQEISVLCDVDIILLMFSPTGK 53
                             799****************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.376161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-27160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-25288IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-19323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-201056IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRVRLSMKR VEKSSNRQVT YCKRRSGILK KAQEISVLCD VDIILLMFSP TGKPTLFQGG  60
PSNFDEIIAK FAQLTPQERA KRKMESLELK VLTMLMVTLQ TLRKTFKKHY NDIGVQEFLD  120
ASDPSVEELH NQVKVLQSRF TEVEMRLNWW SNPYKINKVE DLTLMECALR ESLNAVHVQK  180
LQNTRHLHLL MNSELDGQTH PWHSANKIQH MSFPQAPNVL PQENMGYSGD TSVCESSHVL  240
DSGKLIKARQ ASTAILDNSV LNDLNSIESL RQQLSDQSVD SVNNTAAGAV AFPEFDEKSY  300
LQIICDCMRF TDAVFVDSYV RICIGGLLSE S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-14178177MEF2C
5f28_B3e-14178177MEF2C
5f28_C3e-14178177MEF2C
5f28_D3e-14178177MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069928.11e-166agamous-like MADS-box protein AGL65 isoform X1
SwissprotQ7X9I04e-54AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A3Q7FR611e-161A0A3Q7FR61_SOLLC; Uncharacterized protein
STRINGSolyc03g115910.1.11e-161(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.15e-54AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]