PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00136.1_g00025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 331aa MW: 37497 Da PI: 7.2369 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.7 | 3e-23 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr+e +snrqvt++kRr gilKKA+E+SvLCd+++ +++fs+tgk Sme2.5_00136.1_g00025.1 9 KRVEKSSNRQVTYCKRRSGILKKAQEISVLCDVDIILLMFSPTGK 53 799****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.376 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-27 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-25 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-20 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MGRVRLSMKR VEKSSNRQVT YCKRRSGILK KAQEISVLCD VDIILLMFSP TGKPTLFQGG 60 PSNFDEIIAK FAQLTPQERA KRKMESLELK VLTMLMVTLQ TLRKTFKKHY NDIGVQEFLD 120 ASDPSVEELH NQVKVLQSRF TEVEMRLNWW SNPYKINKVE DLTLMECALR ESLNAVHVQK 180 LQNTRHLHLL MNSELDGQTH PWHSANKIQH MSFPQAPNVL PQENMGYSGD TSVCESSHVL 240 DSGKLIKARQ ASTAILDNSV LNDLNSIESL RQQLSDQSVD SVNNTAAGAV AFPEFDEKSY 300 LQIICDCMRF TDAVFVDSYV RICIGGLLSE S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-14 | 1 | 78 | 1 | 77 | MEF2C |
5f28_B | 3e-14 | 1 | 78 | 1 | 77 | MEF2C |
5f28_C | 3e-14 | 1 | 78 | 1 | 77 | MEF2C |
5f28_D | 3e-14 | 1 | 78 | 1 | 77 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069928.1 | 1e-166 | agamous-like MADS-box protein AGL65 isoform X1 | ||||
Swissprot | Q7X9I0 | 4e-54 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A3Q7FR61 | 1e-161 | A0A3Q7FR61_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g115910.1.1 | 1e-161 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7640 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 5e-54 | AGAMOUS-like 65 |
Publications ? help Back to Top | |||
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