PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00130.1_g00008.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 321aa MW: 36776.3 Da PI: 9.3007

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00130.1_g00008.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	99.5	1.9e-31	45	150	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+kv tpsdv+k++rlv+pk++ae++ +++ +++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v Sme2.5_00130.1_g00008.1 45 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsSSNDKGGLLLNFEDSNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVS 130 89**************************955666889******************************************* PP EEE-.SS.SEE..EEEEE-S CS B3 82 Fkld.gr.sefelvvkvfrk 99 F++ ++ s+ +l++ ++r+ Sme2.5_00130.1_g00008.1 131 FQRGaSEfSKHRLFIDWRRR 150 765778888899999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.3E-42	34	151	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-31	42	149	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.11E-25	43	138	No hit	No description
Pfam	PF02362	3.7E-29	45	150	IPR003340	B3 DNA binding domain
SMART	SM01019	5.5E-22	45	151	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.254	45	151	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MNFFGGSRLG IQQEEEAAAS SYQKSSSNTE LMLMDSSLIE REHMFDKVVT PSDVGKLNRL 60 VIPKQHAEKY FPLDSSSNDK GGLLLNFEDS NGKPWRFRYS YWNSSQSYVM TKGWSRFVKE 120 KKLDAGDIVS FQRGASEFSK HRLFIDWRRR PIDIMSNHHF MVPHHFSDAR IFPLQPNNYP 180 TYSYNNNFTV QQRSPNYYNP RSCYMYGISN SPYYMMGNSN FNDSSTAAAT VIRSTAPQGC 240 STSHVVEPRV FDSVPVVQGK VAAKRFRLFG VNMDCPMDHP DISAIPTTAT YSQIPSEESS 300 EKGMRRNTVN LSFFVEDKLR K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-62	38	151	1	114	B3 domain-containing transcription factor NGA1
5os9_B	3e-62	38	151	1	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352221.1	1e-138	PREDICTED: B3 domain-containing transcription factor NGA3-like
Swissprot	Q6EU30	2e-68	Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBL	A0A0V0IB58	1e-138	A0A0V0IB58_SOLCH; Putative B3 domain-containing transcription factor NGA3-like
STRING	PGSC0003DMT400015011	1e-138	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2817	23	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01030.1	1e-69	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]