PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00128.1_g00022.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 166aa    MW: 18817 Da    PI: 4.4221
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00128.1_g00022.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.19.4e-131558144
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                             k i+nk   +++fsk r+ ++ KA+EL + Cd+++ vi fs+tg
  Sme2.5_00128.1_g00022.1 15 KEIDNKEDGYTSFSKHRAELFEKANELVIECDVDIGVITFSPTG 58
                             689***************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.395767IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-12766IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-18878IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-8929IPR002100Transcription factor, MADS-box
PfamPF003192.1E-141763IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEDKKGKGRE KILMKEIDNK EDGYTSFSKH RAELFEKANE LVIECDVDIG VITFSPTGMP  60
VSFFHPTVDA VVSRFQNPEV ELSESTHLVA DHSRNEVNQL KNRLKQFAII EDPAIETYDE  120
DMQKGWWESI EQLNADDVAK FEALLGTLVS NLQNRLNQLE NGASSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577055.14e-68PREDICTED: agamous-like MADS-box protein AGL61 isoform X1
TrEMBLA0A2G2WK573e-68A0A2G2WK57_CAPBA; Uncharacterized protein
STRINGPGSC0003DMT4000914283e-64(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.14e-19AGAMOUS-like 57