PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00125.1_g00020.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 330aa    MW: 37457.4 Da    PI: 5.3692
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00125.1_g00020.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.38.3e-2335126183
                 trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                              rWt+qe+l+Li++++  eer  rg+         + +p+W++vs+++r++g  r+p+qC+++w+n+  ++kkik+++ + +  s+s
  Sme2.5_00125.1_g00020.1  35 RWTRQETLVLIQGKKIAEERAHRGRkstsvfgsdKPEPKWDSVSSYCRQHGADRGPVQCRKRWSNMISDFKKIKTWDTQINGSSES 120
                              8**************999999987556677777699******************************************99766666 PP

                 trihelix  78 tcpyfd 83 
                               +   +
  Sme2.5_00125.1_g00020.1 121 YWIISN 126
                              776555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.14328101IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-534102IPR009057Homeodomain-like
PfamPF138376.2E-1234117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTLGSAEMNE NTATLADGQQ KLTEDGRSKT PRHSRWTRQE TLVLIQGKKI AEERAHRGRK  60
STSVFGSDKP EPKWDSVSSY CRQHGADRGP VQCRKRWSNM ISDFKKIKTW DTQINGSSES  120
YWIISNDLRR ERRLPGSFDR EVYNVLDGKD FTAEAYQLAL VTITTDEKLD YGIETVEEEE  180
AEEVEEENDN VSHTGEYTME DDVSPAAEEV GSNPLKEHIV KDKKAKSIPS PTPRSGTVEG  240
EQPGSDFWNS PMFHDRVKKR RQSPDGCIDG NLGCKLLKTL ERNTNMLHSQ LDAQMENRQR  300
DREQQNEHTD SLIAALNKVA DAVARVADKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068691.10.0trihelix transcription factor ASR3-like
TrEMBLM1B4650.0M1B465_SOLTU; Uncharacterized protein
STRINGSolyc03g118230.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-63Trihelix family protein