PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HB-other

Protein Properties

Length: 939aa MW: 105090 Da PI: 8.5745

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00123.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.3	7.2e-05	12	68	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + ++++e +e+++ g+ +qV+ +F +R++ +k Sme2.5_00123.1_g00009.1 12 KRPRDLLNSKTIKYMQSIFSVKDAINKKETREISALFGVRVTQVRDFFAAQRTRVRK 68 7999**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.875	9	69	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-5	11	70	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.5E-4	12	68	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	2.4E-5	150	242	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	4.18E-6	151	240	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 939 aa Download sequence Send to blast
MAAGALSIKI GKRPRDLLNS KTIKYMQSIF SVKDAINKKE TREISALFGV RVTQVRDFFA 60 AQRTRVRKFL RLSREKTSIS NLSIEGPCPI PLSSDPKEGP SCSTQDEVLT VIEEKDRHFV 120 DNILNLMRKE ESFSGKVKLM DWFLEVQNPS VLYWFLTKEG VMVLVAWLTE AAEEEQTSIL 180 HIILKVLCHL PLHKAFPAHM SAILQSVNSL RFYRNPDISN RARILLARWS KIFAKSQAMK 240 KRNGIKSASD VHDELLLQQS ISEVVGDEIW NSKIEDAEEA HANLCGTSEN SRKWDSPQPV 300 KLLMASSDDS NKRLKGALVS KTRERRKVQL MEQPNQRTMG RSLGRPAPAT QGRPLSADDI 360 QKAKMRAQFM QSKYGKANND DTSRLKPQAP NGITSPPDGI LHGAPKLQDR PKVEECEKLR 420 SFPSIGSNQL ENHLKLSSDT EEPPPKRCKR MQIPWRKPPV ILFQPILFDA EVQLSDTWKV 480 CAGDESKEVD IQNKRIRRER ETIYRTVQEI PLNPKEPWDR EMDPDDTLTT EIPIEQLPDT 540 EGAETGVLPL EDRETEAALA SMPNGITPTA EPDVELLAIL LKNPELVYAL TSGEVGNLSS 600 EQTVKLLDSI KANGMNSLSI QTNLTRDAER KVEVSLPSPT PSSDPGTSGS TLQNFARNPF 660 SQRSSMAVTE ANGVFQPSAS VHSQEMLQAN SLVHQQTPLA PQLAQQLALL QAAAGSYGND 720 HRPSPLNSSI NQTVLANPMH SQLSASEPAI NRNSYSPFAS AEYNLHSATA AAGAATRIQG 780 ETYGHIRSSP MPIANVQQRT ISLQSSQMTP PRPQLQTQSQ PGYAPEHTWA GSAFNRGYQE 840 NSIPNHYNAH VAGYVEPGLQ QAAWRGNNYV EEAGFESWSP DNSPVRRQEQ LARWNYQEPL 900 MHMRNNYRPD WSTSRNPGYY SGYRGPDDGG NRRWVDRRR

Sequence ? help Back to Top

Protein Sequence Length: 939 aa Download sequence Send to blast

MAAGALSIKI GKRPRDLLNS KTIKYMQSIF SVKDAINKKE TREISALFGV RVTQVRDFFA  60
AQRTRVRKFL RLSREKTSIS NLSIEGPCPI PLSSDPKEGP SCSTQDEVLT VIEEKDRHFV  120
DNILNLMRKE ESFSGKVKLM DWFLEVQNPS VLYWFLTKEG VMVLVAWLTE AAEEEQTSIL  180
HIILKVLCHL PLHKAFPAHM SAILQSVNSL RFYRNPDISN RARILLARWS KIFAKSQAMK  240
KRNGIKSASD VHDELLLQQS ISEVVGDEIW NSKIEDAEEA HANLCGTSEN SRKWDSPQPV  300
KLLMASSDDS NKRLKGALVS KTRERRKVQL MEQPNQRTMG RSLGRPAPAT QGRPLSADDI  360
QKAKMRAQFM QSKYGKANND DTSRLKPQAP NGITSPPDGI LHGAPKLQDR PKVEECEKLR  420
SFPSIGSNQL ENHLKLSSDT EEPPPKRCKR MQIPWRKPPV ILFQPILFDA EVQLSDTWKV  480
CAGDESKEVD IQNKRIRRER ETIYRTVQEI PLNPKEPWDR EMDPDDTLTT EIPIEQLPDT  540
EGAETGVLPL EDRETEAALA SMPNGITPTA EPDVELLAIL LKNPELVYAL TSGEVGNLSS  600
EQTVKLLDSI KANGMNSLSI QTNLTRDAER KVEVSLPSPT PSSDPGTSGS TLQNFARNPF  660
SQRSSMAVTE ANGVFQPSAS VHSQEMLQAN SLVHQQTPLA PQLAQQLALL QAAAGSYGND  720
HRPSPLNSSI NQTVLANPMH SQLSASEPAI NRNSYSPFAS AEYNLHSATA AAGAATRIQG  780
ETYGHIRSSP MPIANVQQRT ISLQSSQMTP PRPQLQTQSQ PGYAPEHTWA GSAFNRGYQE  840
NSIPNHYNAH VAGYVEPGLQ QAAWRGNNYV EEAGFESWSP DNSPVRRQEQ LARWNYQEPL  900
MHMRNNYRPD WSTSRNPGYY SGYRGPDDGG NRRWVDRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006359408.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0V0IY70	0.0	A0A0V0IY70_SOLCH; Putative homeobox protein LUMINIDEPENDENS-like
STRING	XP_009604664.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5240	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-159	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]