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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_00113.1_g00009.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
M-type_MADS |
Protein Properties |
Length: 325aa MW: 36252.5 Da PI: 4.5119 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00113.1_g00009.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 25 | 2.4e-08 | 7 | 31 | 20 | 44 |
HHHHHHHHHHHHT-EEEEEEE-TTS CS
SRF-TF 20 ilKKAeELSvLCdaevaviifsstg 44
+ KK +ELS+LCd+++++ii+ ++
Sme2.5_00113.1_g00009.1 7 LVKKISELSILCDIKACMIIYDGNN 31
78******************96555 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MTTLVKLVKK ISELSILCDI KACMIIYDGN NHQIWPHDSN EVEELINLYK NQPLEGRSKR 60 NKSLSNYFKN DQKIKADIKV EKYPTWDSRF DYLSSEELQN LAGVLEKRMQ NAKGRVEFLK 120 STKVEDSNIG SSLSHHEIWD NDNLKQSTMW PVNSFTDYEN FFQSNIPICG VDSVGVGTDN 180 GLLSVDDYQF GNADYFMMIE RENWSADNEN GSSLTMQPMT NNEIGSSLTM QSMENNGIGT 240 SSIMLTMANN GIGSSATMQP MANNGNNGIG SSATMQPMAN NGIGSSATMQ PMANNGIGSS 300 VTMHIMDQWP FIYNDSTHDM PYGFL
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