PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00113.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 325aa    MW: 36252.5 Da    PI: 4.5119
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00113.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF252.4e-087312044
                             HHHHHHHHHHHHT-EEEEEEE-TTS CS
                   SRF-TF 20 ilKKAeELSvLCdaevaviifsstg 44
                             + KK +ELS+LCd+++++ii+  ++
  Sme2.5_00113.1_g00009.1  7 LVKKISELSILCDIKACMIIYDGNN 31
                             78******************96555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.58E-9769IPR002100Transcription factor, MADS-box
PfamPF003191.5E-6732IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTTLVKLVKK ISELSILCDI KACMIIYDGN NHQIWPHDSN EVEELINLYK NQPLEGRSKR  60
NKSLSNYFKN DQKIKADIKV EKYPTWDSRF DYLSSEELQN LAGVLEKRMQ NAKGRVEFLK  120
STKVEDSNIG SSLSHHEIWD NDNLKQSTMW PVNSFTDYEN FFQSNIPICG VDSVGVGTDN  180
GLLSVDDYQF GNADYFMMIE RENWSADNEN GSSLTMQPMT NNEIGSSLTM QSMENNGIGT  240
SSIMLTMANN GIGSSATMQP MANNGNNGIG SSATMQPMAN NGIGSSATMQ PMANNGIGSS  300
VTMHIMDQWP FIYNDSTHDM PYGFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350347.11e-139PREDICTED: serum factor response D-like
TrEMBLM1CN251e-128M1CN25_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000710011e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-13M-type_MADS family protein